Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00649 ATGGGGTCAGACGAAGAAGATTTCGTATTCTTTGGAACGCCCATAGAACGCGAGGAAGAGATAGGCAGCCGTAAAAAGAAAGCAGTGGCTGAGGCGTCTGGTCAACTGCGAAGTCTTCCTCATTGGAAACAGGAGGTTACAGATGAGGAAGGGAGAAGAAGGTTTCATGGTGCATTTACTGGCGGGTTTTCAGCTGGTTACTACAACACTGTGGGCTCAAAAGAGGGTTGGACACCACAGACTTTTACATCATCCAGGAAAAGTAGAGCTGAAGTCAAAGAGCAGAACATTTTAAACTTCTTAGATGAAGATGAAAAGGCTGAATTGGAAGGTCGATCCATTGGGACATCTTTTCAGTTTGATACATTTGGATTCACAGCCACAGAGTTTGCTCGTAAACAAGCTGAGAAGGAACAGCATCAGAGGCCATCAGCTATTCCTGGACCTGTTCCTGATGAAATTGTTATTCCGGCTACTGAGTCTATAGGTGTCAAACTGCTATTGAAGATGGGATGGCGACGTGGTCGTTCAATTAAAGATTCACAAACAAATACACTATATAATGCACGGCGAGAAGCTCGGAAAGCTTTCTTAGCATTTTCTTCAGGTGATGTTAAATCACAGATGGAGGGTGAAAATGATACTAATTTAGTGCAGCAGGCTAATGAGGACGTCTATTTGTCTCCAAGCACACCTGATTATGTGATAGACCCAAAGCAGGATTTGTACGGTTTGGGTTTTGATCCTTATAAGCATGCACCTGAGTTTAGGGAAATAAAAAAAGCACGCAAATCTGGGAGTCGGCAGTTCAGTCATGAAAAGGCTGTTTCCAACAGACATAGTCTTTTTGGTTTTAAGGCCGGTAATGTTGCTTCTGGTTTCGGAATTGGGGCACTTGAGGAACTTGGCGCAGAAGATGAGGATGTCTATGCCTCTGAGTATCAATTTGAGGAGAGTTATGTGCAAGAGCTAGACTCTTCCAGGTTGATAACAGATGGTAAGGAAGTGTTGATTGGGAAAGAACATGGTCTCTTACCTCGATTTAGGATTGCGACGAATTCTGATCATCAGTTGGAAAGATTTGATCCTCCTGTGATTCCCGAGGGTTTCATACCACACCATAAATTTTCTGGGCCTCTTGAAACTGACTACAACCTTGCTGCTGGTACCCCTCCTGCAATAGTTCCCCCGCCTGATGATAACAATCTGAAGCTCTTAATAGACGGAGTTGCTACTTTGGTTGCCCGGTGCGGCAAAGTATATGAGGATCTCTCTAAAGAGAAAAATAAGTCAAATCCAATGTTTAGTTTTCTTTCAGGAGAAAGTGGACATGAGTATTATGCAAGGAGACTGTGGGAAGAGCAAAGAAAACGTTTGGATCACAACATCCATCTGTCTGATGCAAAATCATCACCAATCCCTGAGAAGATGACAGCAGAGTCTCGTGGCAAAATTTTAGGAGAAAAGCCCTTGGAAAGAAGCTCAAACAATTCAAGGTCCTCTCTGTTATCTGCAGATGTGCAACTTCAATACAATCTTTCAGATACTTTCACCAAACCAGCATCTTTTAATCAATCACGTGAGGTTATCAAACCTTTCAAGGATGATCCTACAAAACAAGAAAGATTTGAGCATTTTCTTAAGGAAAAGTACCATGGAGGGCTTCGGTCAACAGGATCTGGTGGAGCTAGTAACATGTCAGAGGCAGCTCGTGCTTGCGAGCGGCTGGACTTTGAGGCTGCAGCTGAGTCAATCGAGAAAGGAAAAACAGGGGAAGAAGTCAAGCACTTGAGTTATGGTATTACAAGTTTCTCAGCAATGGGAGGGATGCAGTTTACTTCTGGTGGAGTGGAGAAAGATGACGGCACAAAAGCAGAGGATTTGACTGCAAAAGAAATTCGCCCAAAAAGGGAAGAATATCAATGGCGTCCTGCGCCCATCCTTTGCAAACGTTTTGATCTTCCACCGCCGGCTCCAAGGATGAGGAGCAAGATAGATTCACTGATCTTCATGAAGGATTCAGTTCAATCCAAGAAAGTGGAAGAAACGGAGACAGCAAGTATGGATCCATTTCGATTGGCTGAAACTGAACCTCAAGTTATTAATGAAGAGGAGGTAGAAGTTGCGAGTATAGAGAGGCCAGTTGACCTCTATAAGGCTATCTTCTCTGATGATTCAGATGATGAAGGGGACACACCTAATCTCAGCAAAGTGGAGAATCAAGATAAAAAAGCTGAAGTAGCTAATACAACATTGAACCGTTTGATTGCTGGTGACTTTTTGCAATCCTTGGGCAAAGAACTTGGCCTGGAAGTCCCTCCTGATTTGCCTCCATCAATGAACAAAGCCCAAATTCCTGGTCATCAAAAAGGAGTTGATCATACCAAGTCGGGCAATGCTGATTCTTCTTTGGTCGGTGATCATCCTTCATCTACCCTTGATGTTTTTAATGGGTCTGGGGAGAATATCTTACCAGGAAACAAGGTAAGTGTGCAACCTGATAAAATTGAAGAAAATGAACTACTTCATGAAAACTCAGCAGGAAGAGGTAGTAAATATATGGATAAAGTTACTGAGAAGAAGCTGCCTCAAAATGATAGAAAAGCTAACAGGAATTCAAGCCGTTCTCGAGATTGGAGCGACAGCTCATCAGAAGAAGAAAAGGGAAGAAAACATTCTAGTAGGCGTCGTTACAGGAGCAGCGACTCAGAGGGTGATTCGTCAAGTGGAAATCATGATGACAATCATTTTGGGTCAAAAAAGAGAAAGAAAGGATACTCTAGAGAAAAAAGCAGCAGCCGAAAACACCCAAAATATAATAAGAACAAAAGAAGAGATTCCTCCCCAAGGGATCGATATGGCAATAGAAAACACTCTACAGATTATAAGCAAGATCGAAGAAAATGA 2907 42.72 MGSDEEDFVFFGTPIEREEEIGSRKKKAVAEASGQLRSLPHWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTFTSSRKSRAEVKEQNILNFLDEDEKAELEGRSIGTSFQFDTFGFTATEFARKQAEKEQHQRPSAIPGPVPDEIVIPATESIGVKLLLKMGWRRGRSIKDSQTNTLYNARREARKAFLAFSSGDVKSQMEGENDTNLVQQANEDVYLSPSTPDYVIDPKQDLYGLGFDPYKHAPEFREIKKARKSGSRQFSHEKAVSNRHSLFGFKAGNVASGFGIGALEELGAEDEDVYASEYQFEESYVQELDSSRLITDGKEVLIGKEHGLLPRFRIATNSDHQLERFDPPVIPEGFIPHHKFSGPLETDYNLAAGTPPAIVPPPDDNNLKLLIDGVATLVARCGKVYEDLSKEKNKSNPMFSFLSGESGHEYYARRLWEEQRKRLDHNIHLSDAKSSPIPEKMTAESRGKILGEKPLERSSNNSRSSLLSADVQLQYNLSDTFTKPASFNQSREVIKPFKDDPTKQERFEHFLKEKYHGGLRSTGSGGASNMSEAARACERLDFEAAAESIEKGKTGEEVKHLSYGITSFSAMGGMQFTSGGVEKDDGTKAEDLTAKEIRPKREEYQWRPAPILCKRFDLPPPAPRMRSKIDSLIFMKDSVQSKKVEETETASMDPFRLAETEPQVINEEEVEVASIERPVDLYKAIFSDDSDDEGDTPNLSKVENQDKKAEVANTTLNRLIAGDFLQSLGKELGLEVPPDLPPSMNKAQIPGHQKGVDHTKSGNADSSLVGDHPSSTLDVFNGSGENILPGNKVSVQPDKIEENELLHENSAGRGSKYMDKVTEKKLPQNDRKANRNSSRSRDWSDSSSEEEKGRKHSSRRRYRSSDSEGDSSSGNHDDNHFGSKKRKKGYSREKSSSRKHPKYNKNKRRDSSPRDRYGNRKHSTDYKQDRRK 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9945253 9954477 - Bda012496.1 Bda15g00649 22344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00649 968 Gene3D Surp module 390 459 IPR035967 GO:0003723|GO:0006396
Bda15g00649 968 ProSiteProfiles G-patch domain profile. 159 178 IPR000467 GO:0003676
Bda15g00649 968 SUPERFAMILY Surp module (SWAP domain) 388 456 IPR035967 GO:0003723|GO:0006396
Bda15g00649 968 SMART surpneu2 404 456 IPR000061 GO:0003723|GO:0006396
Bda15g00649 968 PANTHER BNACNNG56020D PROTEIN 1 779 - -
Bda15g00649 968 MobiDBLite consensus disorder prediction 944 968 - -
Bda15g00649 968 Pfam Protein of unknown function (DUF1604) 39 114 IPR011666 GO:0006397
Bda15g00649 968 MobiDBLite consensus disorder prediction 833 920 - -
Bda15g00649 968 MobiDBLite consensus disorder prediction 921 943 - -
Bda15g00649 968 MobiDBLite consensus disorder prediction 465 499 - -
Bda15g00649 968 ProSiteProfiles SURP motif repeat profile. 406 450 IPR000061 GO:0003723|GO:0006396
Bda15g00649 968 Pfam Surp module 406 453 IPR000061 GO:0003723|GO:0006396
Bda15g00649 968 MobiDBLite consensus disorder prediction 723 742 - -
Bda15g00649 968 MobiDBLite consensus disorder prediction 771 968 - -
Bda15g00649 968 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 779 - -
Bda15g00649 968 MobiDBLite consensus disorder prediction 796 826 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00649 K13123 GPATCH1; G patch domain-containing protein 1 - qsu:111987284 1168.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00649 Bda_Chr15 FPKM 12.832157 13.357723 9.494291 9.467348 9.50294 9.627048 10.682981 9.908192 8.77354