Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00656 AAAATGGCTTGGAGGAGAGTGTTGAAGGCTTTACAGGCACTGGTGGCCCACTGGGCACCTTGCCATACGGTTGTTGCCACGACCTTGCTTATCGCATTTGAGTTGCTTCTCTGTATATATCTTGAGAGCATTTATGTTCATGGTTTTGCAGCAGTCAGTTTGAAGATTGTTTTTCTTCCATTATTGGCATTTGAAATGACTATCCTAATTGATGATTTCAGAATGTGTAGGGCTCTTATGCCGGGAGATAATGAACGCTTGAGCTATGAGGCTATATGGGAAACTCTTACGCACTTCTGGTTGGTAATTTCCATGATCTTCTTTGTCGCTGCTACAATCCTCACCCTCCTGAAGCTCTGTGGCGATGTTGACGCTCTCAGTTGGTGGGACTTATTTATAAATTTTGGTATTGCTGAGTGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAACCCTATTATTCATAGAAATTCTTCCAGTAGAGAAGCCACTTCTTCTTCTTCTTTGATTATTAGATATCTAGATTGGGGTAGCGGATTAATACTCACCCCCCAGCAAGATGAGCAGCAAGATAGAATGTGTGGCCTTCGAGACATTGGAGGCCATATAATGAAACTTCCGATTATCGGCTTTCAAATCCTTCTTTGCATGCGCCTTGAGGGAACACCTGCCAATGCTAAATATATACCAATCCCGGCTCTTTTTTCGCCTCTTTTCCTGCTGCAAGGTGCTGGCGTATTATTTTCGGCATCTATGTTGGTGGAGAGAATTGTTCTTCTTCGACGAAGCGGATTTGGCAATGGGTTGTATTTTAGATTTTCTTCAAATGCTCATGAATGTTTCGAGTTCTTTCACCGTGGATCAAGACTTTTGGGTTGGTGGTCAATTGACGAAGGAAGTCATGAGGAACTGGCCAGAATATTTCACGAGAGAGCTTCCGGGTATAATACTTTCTCTGGTTATCCTCCTGAGATTGTGAAAAAAATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGAGACTTCAAGCTGCTCTTGGCGAGCAGACGGAAATTACGAAATATAGTCAGCTCGAGTACGAAAGACTTCAGAATGAGAAGGTGTTATGTAGAGTTTGCTTCGAGGGAGAGATTAGCATCGTCCTTCTTCCATGCAGGCATCGAATACTTTGCCGCGTGTGCTCGGAGAAGTGTAAAAAGTGCCCGATTTGTCGAGTGTCTATCGAAGAGCTTTTACCGGTATATGACGTTTAG 1251 43.49 KMAWRRVLKALQALVAHWAPCHTVVATTLLIAFELLLCIYLESIYVHGFAAVSLKIVFLPLLAFEMTILIDDFRMCRALMPGDNERLSYEAIWETLTHFWLVISMIFFVAATILTLLKLCGDVDALSWWDLFINFGIAECFAFLVCTKWSNPIIHRNSSSREATSSSSLIIRYLDWGSGLILTPQQDEQQDRMCGLRDIGGHIMKLPIIGFQILLCMRLEGTPANAKYIPIPALFSPLFLLQGAGVLFSASMLVERIVLLRRSGFGNGLYFRFSSNAHECFEFFHRGSRLLGWWSIDEGSHEELARIFHERASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQLEYERLQNEKVLCRVCFEGEISIVLLPCRHRILCRVCSEKCKKCPICRVSIEELLPVYDV 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10037769 10043311 + Bda012505.1 Bda15g00656 22351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00656 416 SMART ring_2 369 403 IPR001841 -
Bda15g00656 416 SUPERFAMILY RING/U-box 359 411 - -
Bda15g00656 416 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 16 416 - -
Bda15g00656 416 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 416 - -
Bda15g00656 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 414 IPR013083 -
Bda15g00656 416 Pfam Zinc finger, C3HC4 type (RING finger) 366 409 - -
Bda15g00656 416 Pfam Transmembrane Fragile-X-F protein 12 241 IPR019396 -
Bda15g00656 416 ProSiteProfiles Zinc finger RING-type profile. 369 404 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00490 Bda15g00656 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02099 Bda-Chr1:57097521 Bda15g00656 Bda-Chr15:10037769 4.37E-166 dispersed
Bda04g00715 Bda-Chr4:55937042 Bda15g00656 Bda-Chr15:10037769 9.27E-07 dispersed
Bda15g00656 Bda-Chr15:10037769 Bda11g01579 Bda-Chr11:49021074 2.92E-111 dispersed
Bda15g00656 Bda-Chr15:10037769 Bda06g00490 Bda-Chr6:6944810 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00656 - - tcc:18604055 679.093