Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00658 CAGTCAACCAAAAACATGTCGAGTGCAGGTGTTTGGACCAAAGAAGAAGACAAAGCTTTTGAAAATGCAATAGCAATGCACTGGGTTGGGGAAAAAGATTCAGAGGAGCAATGGCAGAAGATAGCTACAATGGTCCCAACAAAAACCATGGAAGACTTGAAGCAACACTATCAAATGTTAGTGGAGGATGTGGCTGCCATTGAAGCCGGTCAAATACCTATTCCGAACTATGTCGGGGAGGAAGCTACTTCCTCGAACAAAGACCATCACAATTCGGTTTCTAACGGTTCAATGGCAGCTGCAGATAAAAAATGGTTGGCCGGACTGGCAAATGACTCGGCCGGTCATGGCGGGAAAGGAGGATCGAGGTCTGAACAAGAACGACGAAAGGGAATTCCATGGACAGAAGAAGAGCACAGGTTGTTTTTACTGGGTCTAGACAAGTTTGGAAAGGGAGATTGGAGAAGCATTTCAAGGAATTTTGTCATTTCAAGGACCCCTACCCAAGTAGCTAGCCATGCACAAAAGTACTTTATAAGATTGAACTCAATAAACAGAGATAGAAGAAGATCAAGTATTCATGATATTACCAGCGTCAACAATGGAGATGTCTCCTCCCATCAAGCACCCATCACAGGCCAACAAGCCGGACTAAACCCATCAGCCGGAACCATCCGCCCACCGCCATTGAAGCATGGAGCTCAGCCTCATATGACTGGTATAGGGATGTATGGAACTCCGATGGGTCATCCTGTAGCCGCTCCTCCTGGGCATATGGCATCGGCTGTTGGGACTCCGGTGATGCTTCCAGCAGGACATCATCCTCATCCACCCTATGTTTTACCTGTTGCTTATCCAATGCCACCTTCAACAATGCATCAGTAA 885 46.78 QSTKNMSSAGVWTKEEDKAFENAIAMHWVGEKDSEEQWQKIATMVPTKTMEDLKQHYQMLVEDVAAIEAGQIPIPNYVGEEATSSNKDHHNSVSNGSMAAADKKWLAGLANDSAGHGGKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSINRDRRRSSIHDITSVNNGDVSSHQAPITGQQAGLNPSAGTIRPPPLKHGAQPHMTGIGMYGTPMGHPVAAPPGHMASAVGTPVMLPAGHHPHPPYVLPVAYPMPPSTMHQ 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10053616 10054715 + Bda012508.1 Bda15g00658 22353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00658 294 SUPERFAMILY Homeodomain-like 128 183 IPR009057 -
Bda15g00658 294 MobiDBLite consensus disorder prediction 110 132 - -
Bda15g00658 294 Gene3D - 132 185 - -
Bda15g00658 294 CDD SANT 133 178 IPR001005 -
Bda15g00658 294 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
Bda15g00658 294 Pfam Myb-like DNA-binding domain 10 60 IPR001005 -
Bda15g00658 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Bda15g00658 294 Gene3D - 3 74 - -
Bda15g00658 294 PANTHER TRANSCRIPTION FACTOR MYBS1 6 293 - -
Bda15g00658 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 130 180 IPR006447 GO:0003677
Bda15g00658 294 ProSiteProfiles Myb-like domain profile. 4 61 IPR001005 -
Bda15g00658 294 SMART sant 8 63 IPR001005 -
Bda15g00658 294 SMART sant 130 180 IPR001005 -
Bda15g00658 294 CDD SANT 12 61 IPR001005 -
Bda15g00658 294 PANTHER TRANSCRIPTION FACTOR KUA1 6 293 - -
Bda15g00658 294 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Bda15g00658 294 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Bda15g00658 294 SUPERFAMILY Homeodomain-like 12 67 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00658 - - - qsu:112024710 444.506
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00488 Bda15g00658 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00812 Bda-Chr3:6892253 Bda15g00658 Bda-Chr15:10053616 5.92E-60 dispersed
Bda14g00002 Bda-Chr14:15210 Bda15g00658 Bda-Chr15:10053616 2.01E-79 dispersed
Bda15g00249 Bda-Chr15:5108492 Bda15g00658 Bda-Chr15:10053616 7.63E-55 dispersed
Bda15g00431 Bda-Chr15:7222310 Bda15g00658 Bda-Chr15:10053616 3.03E-89 dispersed
Bda06g00569 Bda-Chr6:7969435 Bda15g00658 Bda-Chr15:10053616 1.10E-33 transposed
Bda08g00592 Bda-Chr8:6037437 Bda15g00658 Bda-Chr15:10053616 1.16E-36 transposed
Bda11g01577 Bda-Chr11:48986958 Bda15g00658 Bda-Chr15:10053616 0 transposed
Bda15g00658 Bda-Chr15:10053616 Bda06g00488 Bda-Chr6:6900949 2.09E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g360 . . Bda06g00488 Bda15g00658 Bpe12g00497 . . . . . Cma10g00245 Cma11g00261 Car10g00232 . . . Cpe04g01413 . . . . . . . Cla06g01481 Cam06g1636 Cec06g1698 Cco06g1694 Clacu06g1602 Cmu06g1551 Cre06g2364 . . Cone13ag0297 Cone19ag0268 . . . . . . . . . . . . . Cmo10g00264 Cmo11g00267 . . . . . Cpe18g00747 . . . . . . . . . . . . . . Lsi06g01345 Csa01g00367 Chy02g02377 Cme02g01760
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006249 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17200 PF00249 Myb_DNA-binding 7.50E-10 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00658 Bda_Chr15 FPKM 5.608873 5.142354 0.325436 0.384331 26.145475 30.29863 28.636965 0.0 0.284676