Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00661 ATGCTATTTGGAGTTTCAGGAGGAAGTTCTCCTTTCTTATATATGCTTCCCTCAGCTCTTTACAGACCTAAAATGGCCGCTTTTGGCCTTTTCTCTGCCTGTCCTTGCAGCTCATTGCGTGGACCGTATCGGCCTAGACGTTCTGTTTCTTGCTGTGTTGGGCCTTCTTCTGTTACTGGAACTCATGTTTCAAAAGTACCAGTTAAAAGATCAAGAAGATTGGAAGGAGCTGGAAAAAGCATGGAGGATTCAGTTCAACGAAAAATGGAACAGTTTTATGAAGGCTCAGATGGCCCTCCACTCCGTGTCTTACCAATTGGTGGACTGGGAGAAATCGGAATGAATTGCATGCTTGTTGGAAACTATGATCGCTATATTATGATTGATGCCGGTGTTATGTTTCCAGATCATGATGAGCTCGGAGTCCAAAAAATTATACCCGATACGACGTTTATCAAAAGATGGAGCCATAAAATTGAAGCAGTGATCATTACACATGGCCATGAAGATCACATCGGTGCGTTGCCTTGGGTTATTCCAGCTTTGGATTCCCATACACCAATATTTGCATCATCCTTCACAATGGAGCTTATAAGGAAGCGTTTGAAGGAACATGGGCTCTTTGTATCTTCTAGGCTTAAGGTATTTACTACAAAAAGAAAATTCCAGGCTGGGCCATTTGAAATAGAGCCAATCAGGGTAACCCATTCCATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACAATTCTTCATACTGGGGATTGGAAGATTGATGAATCTCCATTGGATGGTAAAATATTTGATCGAGAAGCTCTAGAAAAACTCTCGAAAGAAGGAGTAACGCTGATGATGAGTGACTCAACAAATGTTCTCTCTCCGGGAAGAACGATGAGTGAATCTACTGTGGCTGATGCACTGAAGAGGCATATTTCAGCTGCCAAAGGAAGGGTTATCACCACTCAATTTGCATCAAACATTCACCGTCTTGGAAGTGTGAAAGCCGCTGCTGATATAACTGGTCGAAAGTTGGTATTTGTTGGCATGTCATTAAGAACATATCTCGATGCAGCGTGGAAGGATGGAAAGGCACCCATTGACCCATCAAGTCTGGTAAAAGTGGAGGATATTGATACGTACTCCCCTAAAGATTTGTTAATTGTGACAACTGGCTCGCAAGCAGAACCACGAGCGGCCCTTAATCTTGCGTCATATGGAAGTAGTCATTCTCTCAAATTGAACAAGGAAGATATAATCTTGTATTCAGCTAAGGTGATACCCGGAAATGAATCTCGAGTTATGCAAATGTTGAATCGAATCTCAGAGATTGGGTCGACCATAGTTATGGGTAGAAACGAGGGATTGCACACATCAGGTCATGCATATCGAGGGGAATTGGATGAAATACTTAAAATTGTGAAGCCACAACATTTTGTTCCCATACATGGTGAACTCGTGTTCCTTAAAGAGCATGAGTTGCTGGGAAGGTCTACTGGCATTCGACACACTACTGTAATCAAGAATGGAGAAATGCTAGGGGTATCCCATTTGAGGAACAGAAGAGTTTTATCTAATGGCTTCACCTCTCTTGGGAAAGAGAAACTTCAGTTGAAATACAGCGATGGCGATAAGGCTTTTGGAACCTCGTCTGAGCTTTGCATTGAGGAGAGACTAAGAATCGCAACCGATGGCATTATTGTTGTCTGCATGGAAATTTTACGACCTCAAAACGGGGAAGGTCTAATCGAAAGGAGAATCAAAGGAAAGATAAGAATAACGACAAGGTGTTTATGGCTCGACAAAGGAAAGCTTCTAGATGCACTCCATAAAGCCGCTCATGCTTCGCTATCGAGCTGCCCTGTCAATAGCCCTCTACCCCACATGGAAAGAACGGTATCTGAGGTATTGCGGAAAATGGTAAGGAAGTATAGTGGGAAAAGGCCGGAGGTTATTACCATCGCCATTGAGAACCCTGCTGGAGTTCTTTCTGATGAGCATAGTTCGAGACTTTCCGGCAAGGATGGTAATGATTTTGGGAAATCGAGGAAGGCAGTTGATGAACATTTTAACAGAAGTGCATCAAATACAATAAAAGTAGAAGTCAATGGCAATGTGCATTTGGATACCGGCTTTCAACCAGAACTTGAAGGTGATTCTAATGGAAATGAAGGATTACTTCCCGAGGAAGATGAACTTACGCCAAGTACTGAATCTTCCCAAAAGGTTTCATCCTTGGACGAGAACTCGGAAAATTTCTGGGAAAAATTTGTCACCCCATTGACACCCATTGAAGAACAGGTGGAAGAAAACAACAGTGTTTTCCTTCCACGGCCAGATCTAACGGTGGACATTAAGAAAGAGGATGGTGAAATCAGCATCGATGAGTCCTTTGAAACGATGAATTCTCCTCCACAATTATCGAAGACTTCCAAACGGAATAGGTGGAAACCCGAAGAGGTTAAGAAGCTTCTTCAAATGCGGGGAGACCTACACGGAAGATTCCAAGTAGTGAAGGGGAGAATGGCTTTGTGGGAAGAGATTTCTAGAAACTTGTCGACTGATGGAATAGCACGGAGTCCCGGACAATGCAAATCTCTGTGGGCATCTTTAGTCCAGAAATACGAGAGTATTGAAATATGTCAACAGGAGTACAAGAATGTAGCGAAAAACACGAAAAGTTGGCCGTATTTCGACGAAATGAACAGAATTTTGACTGATTTTGAAGAAGTCGTAACGAAATGA 2751 42.71 MLFGVSGGSSPFLYMLPSALYRPKMAAFGLFSACPCSSLRGPYRPRRSVSCCVGPSSVTGTHVSKVPVKRSRRLEGAGKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYIMIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKEHGLFVSSRLKVFTTKRKFQAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDESPLDGKIFDREALEKLSKEGVTLMMSDSTNVLSPGRTMSESTVADALKRHISAAKGRVITTQFASNIHRLGSVKAAADITGRKLVFVGMSLRTYLDAAWKDGKAPIDPSSLVKVEDIDTYSPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLNKEDIILYSAKVIPGNESRVMQMLNRISEIGSTIVMGRNEGLHTSGHAYRGELDEILKIVKPQHFVPIHGELVFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGKEKLQLKYSDGDKAFGTSSELCIEERLRIATDGIIVVCMEILRPQNGEGLIERRIKGKIRITTRCLWLDKGKLLDALHKAAHASLSSCPVNSPLPHMERTVSEVLRKMVRKYSGKRPEVITIAIENPAGVLSDEHSSRLSGKDGNDFGKSRKAVDEHFNRSASNTIKVEVNGNVHLDTGFQPELEGDSNGNEGLLPEEDELTPSTESSQKVSSLDENSENFWEKFVTPLTPIEEQVEENNSVFLPRPDLTVDIKKEDGEISIDESFETMNSPPQLSKTSKRNRWKPEEVKKLLQMRGDLHGRFQVVKGRMALWEEISRNLSTDGIARSPGQCKSLWASLVQKYESIEICQQEYKNVAKNTKSWPYFDEMNRILTDFEEVVTK 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10101812 10109051 - Bda012511.1 Bda15g00661 22356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00661 916 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 458 502 IPR011108 -
Bda15g00661 916 PANTHER RIBONUCLEASE J 18 916 - -
Bda15g00661 916 CDD GT1 816 878 - -
Bda15g00661 916 Pfam Myb/SANT-like DNA-binding domain 815 906 IPR044822 -
Bda15g00661 916 MobiDBLite consensus disorder prediction 735 751 - -
Bda15g00661 916 MobiDBLite consensus disorder prediction 711 751 - -
Bda15g00661 916 Gene3D - 818 879 - -
Bda15g00661 916 Gene3D - 105 517 IPR036866 -
Bda15g00661 916 MobiDBLite consensus disorder prediction 670 685 - -
Bda15g00661 916 Gene3D - 553 659 - -
Bda15g00661 916 MobiDBLite consensus disorder prediction 666 685 - -
Bda15g00661 916 ProSiteProfiles Myb-like domain profile. 810 874 IPR001005 -
Bda15g00661 916 SMART Lactamase_B_5a 113 310 IPR001279 -
Bda15g00661 916 Gene3D - 302 452 IPR042173 -
Bda15g00661 916 SUPERFAMILY Metallo-hydrolase/oxidoreductase 101 515 IPR036866 -
Bda15g00661 916 CDD RNaseJ_MBL-fold 104 515 - -
Bda15g00661 916 Pfam Beta-lactamase superfamily domain 155 322 IPR001279 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00661 - - - csv:101215740 1313.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00808 Bda15g00661 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00661 Bda-Chr15:10101812 Bda11g00876 Bda-Chr11:8614273 1.21E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g314 Blo04g00825 . Bda06g00808 Bda15g00661 Bpe12g00693 . . . Cmo13g01064 Cmo18g00036 Cma10g00230 Cma11g00279 Car10g00215 Car11g00253 . Cpe20g00122 Cpe04g01400 . . . . . . . Cla06g01463 Cam06g1615 Cec06g1678 Cco06g1671 Clacu06g1579 Cmu06g1531 Cre06g2342 . . Cone13ag0303 . Lsi02g00182 Csa01g00665 Chy12g01438 Cme12g01876 Blo13g00169 Blo15g00068 . . Bpe07g01037 Bpe15g00525 . Bma08g00060 Sed08g2182 Cmo10g00243 Cmo11g00282 Cma13g01023 Cma18g00043 Car13g00858 Car18g00037 Cpe09g01137 Cpe18g00762 Bhi08g01233 Tan05g2268 Cmetu12g1509 Lac10g0238 Hepe07g2392 . . Cla04g01092 Cam04g1143 Cec01g1653 Cco01g1702 Clacu04g1171 Cmu04g1152 Cre01g1447 Lsi06g01326 Csa01g00391 Chy02g02357 Cme02g01735
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17201 PF12706 Lactamase_B_2 5.80E-11 CL0381 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00661 Bda_Chr15 FPKM 0.085711 0.0 0.0 0.0 0.0 0.0 0.0 0.025494 0.041359