Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00666 ATGGTTTCTACTAGAAGGAGTGGATCTCTTTCTGGAAGCAACAGTAAAAGACCCTCTTCTTCCTCCGAGGATAAGCCTCCATCTCCAAAGCGTCAGAAGGTATCTGAAAATGGCGGTACATCGGAAGTGCCGGGGCCTGGGGCGGAGAATTCTAAAGACTCGGTTTCGTTACCTGCTGTGGATCCCGGAGAACGTGAGCCAGAGGATGTTCAGATCGCCGGAAACTGCGGTGGAGATGGTGTTAGCGCTGTAAAAGGCCAGGCTGTGCAAACTGCTGTCGCTGTGGCCTCACCTGTAGCCGAGGGTACCACTCCGGTGATTGAAAAGCCAAGGAGTTCATTTTCGTCGTGGAGTTTGTATCCTCCTAAGCAAAACACAAATTTTGAGACTTCAACGCCATGGTGTAGGCTACTCTCGCAATTTGGGCAGAATCCAAACGTTCTCATTTGTCCTTCCAATTTCACGATTGGATCGAGCAGAAGTTGTAATTTTCCATTGAAGGATCACACGATTAGTGGCACTTTATGCAAAATAAAGCACACCCAGAGGGAGGGAACTACTGTAGCTTTGCTAGAGAGTTCAGGGAGCAAGGGATCGGTGCTAGTAAATGGTGCAGTTGTAAAAAAAAATACCAGTTGTGTGCTTAACTCAGGCGATGAGGTGGTCTTTGGTGCTTTGGGGAACCATGCCTATATTTTCCAGCAACTTACGACTGACATTATGATAAAAGGTTCGGAGTCTCAGAATGGTGTTGGAAAATTTCTTCAGCTCGAAAGGAGGACAGGTGATCCCTCGGCTGTGGCCGGGGCTTCTATATTGGCATCTTTGTCAAGCCTTAGGCAAGATCTATCCCGTTGGAAGCCTCCTGCTCAGACGAGTAAAATCCATTCAGGTCTGGATTTGGCTTCTCATTCTGTTGTTCGCGATGCTACCGAACTTGAGATTGATGGTCCTGAAGCCAACTCCACTCCAGATTCAGGGGGCGATAAAGCTGCGGAGAGGGAACCACTCAACAAAAGTCTTTCTCCTGACAACAACATGGACTCTGGCTTAGAGGCAGGCAATGTAAAACTTTCTGGGGTATTGGAAGAAAGAAACGAGTGGACGGGAGATTTGCAGCCAGCATCAACTCCAGGCATGTCTTTGCGGTGTCAAGCATTTAGAGATGACATTCATGCTGGAATAGTTGATGGCAGAAACTTGAAAGTTTCATTTGAAAATTTTCCTTACTATTTGAGTGAAAATACCAAAAATGTGCTGATTGCAGCTTCTATCATACACTTAAAGCATAAAGAACATGCAAAGTATACATCAGATCTGACTACAGTGAATCCACGAATTTTACTTTCTGGTCCCGCAGGATCAGAAATATATCAGGAAATGCTGTCGGAGGCACTAGCTAATTACTTTGGGGCTAAGTTGCTCATATTTGATAGCCATTCGTTTTTGGGTGGTTTATCATCGAAAGAAGCAGAGCTAGTGAAGGATGGAGCTAATGCAGAAAAACCTTGTAACTGTGCTAAAGAAAGTACGGTATCTACTGACTTGGCTAAGAACATTGATCTATCTAATGGGGAAGAAGACACGCCAAGCTCTTCAAATGGTCCCTTCGACGGTCTGGATTCACAATCAAAGATGGATGCAGATACCATGCCTTCTTCCTCAGGAACATCTAAAAAGTACTTTTTCAAGATTGGTGACAGAGTTAGATTTATGGGTTCAATTGGTGGCAGTTTGTATCCAGCTACATCTTCTTTGAGAGGGCCGCCGATTGGTACTCGTGGGAAGGTTTCGTTAACTTTTGAAGACAACTCTTTGTCAAAGATCGGGATAAAGTTTGATAAACCCATACCTGATGGGGTGGATCTTGGGGGTATTTGTGAAGGAGGCTATGGGTTCTTTTGCAATGCTTCTGATCTTCGTTTAGAGAACTCGGGTCCGGACGAATTGGACAAGTTACTCATTGATACATTGTTTGAGGAAGTGAATACTGTGAGCAGAAGTTCTCCATTTATTTTGTTCATGAAAGACGCTGAGAAATCTCTGGTAGGAAATTCAGATTCATACTCTACTTTCAAAAGTAGACTAGAGAAGCTTCCGGATAATGTCATAGTAATTGTTTCTAACACTCATACGGACAATCGCAAGGAGAAGTCACATCCTGGTGGTCTGCTTTTTACAAAGTTTGGCAGCAATCAAACTGCTCTTCTTGATTTAGCTTTCCCGGATAGTTTTGGAAGATTGCATGACAAGGGAAAGGAAGTTCCAAAAGCAACAAAACTGCTGGCCAAACTTTTCCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTGCTTGTATCTTGGAAGCACCAACTTGATCGAGATATGGAAACCCTGAAAATGAAGGGGAATCTGAATCACTTGCGAACTGTCTTGAGTCGGAGTGGAATGGATTGTGAAGGACTTGATACTCTATGCATAAAGGATCAAACCCTTACAAATGAGAGTGCAGAGAAGGTAGTCGGATGGGCACTAAGCCATCATTTGATGAACAATGCTCATGCTGATACCGATGCTCGGCTTTTCTTGTCTAGTGAGAGCATCCAGTACGCTGTTGGATTATTACATTCTATCCAGAATGAATCTAAGAGCTTAAAGAAGTCACTTAAGGATGTTGTCACTGAAAACGAATTTGAGAAAAGGCTCTTAGCTGATGTTATTCCACCAACTGACATTGGAGTCACATTTGACGATATTGGAGCTCTGGAAAATGTGAAAGATACTTTGAAGGAATTAGTGATGCTCCCATTGCAAAGGCCTGAACTATTCTGCAAGGGGCAACTAACAAAGCCATGCAAAGGGATACTGTTATTTGGTCCCCCTGGTACTGGTAAGACAATGCTAGCAAAAGCTGTTGCCACTGAAGCAGGTGCAAATTTTATTAACATTTCTATGTCTAGCATCACATCCAAGTGGTTTGGCGAGGGTGAAAAGTACGTGAAGGCTGTCTTCTCATTAGCTAGCAAAATCGCTCCTAGTGTCATATTTGTCGATGAAAATTTGTGTGTAACTGCTGCTCACCGGCCAATCAAAGAGATATTAGAAAAAGAAAAGAAGGACAGTGCCACAGCGCTGGCTGAAGGTCGGCCTGTTCCGGCATTAAGTGGAAGTGCTGATATACGACCTCTAAACATGGAGGATTTCAAATACGCTCATGAACGGGTATGTGCGAGTGTATCGTCGGAGTCAGTAAACATGGCAGAGCTTGTACAATGGAATGAGCTATACGGTGAGGGGGGTTCAAGAAGAAAGAGAGCTCTGAGTTACTTCATGTGA 3324 43.89 MVSTRRSGSLSGSNSKRPSSSSEDKPPSPKRQKVSENGGTSEVPGPGAENSKDSVSLPAVDPGEREPEDVQIAGNCGGDGVSAVKGQAVQTAVAVASPVAEGTTPVIEKPRSSFSSWSLYPPKQNTNFETSTPWCRLLSQFGQNPNVLICPSNFTIGSSRSCNFPLKDHTISGTLCKIKHTQREGTTVALLESSGSKGSVLVNGAVVKKNTSCVLNSGDEVVFGALGNHAYIFQQLTTDIMIKGSESQNGVGKFLQLERRTGDPSAVAGASILASLSSLRQDLSRWKPPAQTSKIHSGLDLASHSVVRDATELEIDGPEANSTPDSGGDKAAEREPLNKSLSPDNNMDSGLEAGNVKLSGVLEERNEWTGDLQPASTPGMSLRCQAFRDDIHAGIVDGRNLKVSFENFPYYLSENTKNVLIAASIIHLKHKEHAKYTSDLTTVNPRILLSGPAGSEIYQEMLSEALANYFGAKLLIFDSHSFLGGLSSKEAELVKDGANAEKPCNCAKESTVSTDLAKNIDLSNGEEDTPSSSNGPFDGLDSQSKMDADTMPSSSGTSKKYFFKIGDRVRFMGSIGGSLYPATSSLRGPPIGTRGKVSLTFEDNSLSKIGIKFDKPIPDGVDLGGICEGGYGFFCNASDLRLENSGPDELDKLLIDTLFEEVNTVSRSSPFILFMKDAEKSLVGNSDSYSTFKSRLEKLPDNVIVIVSNTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDKGKEVPKATKLLAKLFPNKVTIHMPQDEALLVSWKHQLDRDMETLKMKGNLNHLRTVLSRSGMDCEGLDTLCIKDQTLTNESAEKVVGWALSHHLMNNAHADTDARLFLSSESIQYAVGLLHSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDENLCVTAAHRPIKEILEKEKKDSATALAEGRPVPALSGSADIRPLNMEDFKYAHERVCASVSSESVNMAELVQWNELYGEGGSRRKRALSYFM 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10139245 10149266 - Bda012516.1 Bda15g00666 22361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00666 1107 Gene3D - 909 1015 IPR027417 -
Bda15g00666 1107 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 81 1015 - -
Bda15g00666 1107 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1016 1107 - -
Bda15g00666 1107 SUPERFAMILY SMAD/FHA domain 133 232 IPR008984 GO:0005515
Bda15g00666 1107 SMART AAA_5 947 1072 IPR003593 -
Bda15g00666 1107 Pfam FHA domain 155 224 IPR000253 GO:0005515
Bda15g00666 1107 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 81 1015 - -
Bda15g00666 1107 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 1016 1107 - -
Bda15g00666 1107 Gene3D - 1016 1094 - -
Bda15g00666 1107 Gene3D - 133 241 - -
Bda15g00666 1107 MobiDBLite consensus disorder prediction 521 555 - -
Bda15g00666 1107 Pfam ATPase family associated with various cellular activities (AAA) 951 1015 IPR003959 GO:0005524|GO:0016887
Bda15g00666 1107 MobiDBLite consensus disorder prediction 1 22 - -
Bda15g00666 1107 CDD AAA 949 1015 - -
Bda15g00666 1107 MobiDBLite consensus disorder prediction 1 76 - -
Bda15g00666 1107 MobiDBLite consensus disorder prediction 313 352 - -
Bda15g00666 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 910 1015 IPR027417 -
Bda15g00666 1107 CDD FHA 134 234 IPR000253 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00666 - - - csv:101214766 1509.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00769 Bda15g00666 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00619 Bda-Chr10:40200828 Bda15g00666 Bda-Chr15:10139245 7.40E-37 dispersed
Bda10g00680 Bda-Chr10:41025769 Bda15g00666 Bda-Chr15:10139245 7.55E-36 dispersed
Bda15g00666 Bda-Chr15:10139245 Bda07g01950 Bda-Chr7:36929345 1.41E-40 dispersed
Bda15g00666 Bda-Chr15:10139245 Bda06g00733 Bda-Chr6:9973979 1.59E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g811 . . . . . Bpe07g00999 . Bma14g02021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0044 . . . . . . . Bda06g00769 Bda15g00666 . . . Bma12g01184 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00666 Bda_Chr15 FPKM 11.997273 10.547426 8.85857 8.284441 22.535208 28.884283 20.52767 12.160316 11.529414