Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00698 ATGGCTAGAGTTCTTGTACAGTCGACAAATATACCCGGGCTAGTCTCTGGGCAGAAGGATGGCCAGTTGAGGGGACCTGGAAATACAAAATCGGCTGTTAGAATGATGAGTAGTCTACAGTTGCCTGGATTGGGGATGAAAGGTTTCTCAGGATTAAGAGGTTTTAATGCTTTAGATACCATGGTCAGGCCTGGGCAAGATTTTCATTCCAAAATAGCAATTTCTCTTTCTTCTCGAAGACAAAGAAGAGCCACCAGATGTGTTCCAAAAGCAATGTTTGAGCGATTCACTGAAAAAGCAATTAAAGTTATTATGCTTGCCCAAGAGGAAGCAAGACGACTTGGTCATAATTTTGTTGGTACAGAACAGATCTTATTGGGTCTTATTGGTGAAGGTACTGGTATTGCTGCAAAGGTTCTTAAATCAATGGGAATTAATCTTAAAGATGCACGGGTGGAAGTGGAGAAAATAATTGGACGAGGTAGTGGATTCGTAGCTGTGGAGATTCCGTTCACTCCCCGTGCAAAACGTGTATTGGAGCTCTCGTTGGAGGAAGCTCGCCAACTTGGCCATAACTATATCGGATCTGAGCATTTGCTTCTTGGATTACTTCGCGAGGGGGAGGGTGTTGCAGCCCGTGTTCTTGAAAATTTAGGAATATCCCAAGTCATTCGTATGGTTGGTGAGAGTACGGAGGCTGTTGGTGCCGGTGTTGGAGGAGGAAGTAGTGGGAATAAAATGCCAACATTGGAGGAGTATGGAACAAATTTGACGAAGCTGGCTGAGGAGGGAAAACTGGACCCTGTTGTTGGAAGGCAACAGCAGATTGAACGTGTAACCCAAATTTTGGGTAGGAGGACAAAAAATAATCCATGTTTGATAGGTGAACCTGGTGTCGGGAAAACAGCAATTGCTGAAGGCCTTGCTCAAAGGATCGCAAATGGGGATGTTCCAGAAACAATAGAAGGAAAGAAGGTCATTACCTTGGACATGGGGCTTCTTGTAGCTGGCACAAAATACCGAGGAGAGTTTGAGGAGAGGTTAAAAAAATTAATGGAAGAGATCAAGCAAAGTGATGAAATAATACTCTTTATAGATGAAGTCCACACATTAATTGGGGCAGGAGCTGCTGAAGGAGCTATTGATGCTGCGAACATATTAAAACCTGCTCTTGCTAGAGGGGAACTGCAGTGTATTGGAGCCACGACACTAGATGAATATAGAAAACACATCGAGAAAGACCCAGCTTTAGAAAGACGATTCCAGCCAGTCAGAGTACCTGAACCGACTGTGGATGAAACCATACAGATTCTGAAAGGGCTTAGGGAGCGCTATGAGATTCACCACAAGCTTCGCTACACGGATGAAGCTCTAGTAGCTGCTGCACAGTTGTCGTATCAATATATCAGACTTTGTGTTTTGATGGACTCTATCTTTCTACTCAATCGCTCCTCACAAATGAGTCTTAGTTTTATATTTTTTTTCCAGCTACCTGAGGAAGCCAGAGAGCTTGAGAAAGAGCTCAGGCAGATCACCAAAGAAAAGAACGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGATCTGAAGGCACAGATCTCCACTCTTGTGGATAAGGGCAAGGAGATGAGTAAAGCAGAGAGCGAAGCAGGCGATGTAGGCCCTGTTGTGACTGAAGTCGACATTCAGCACATTGTGTCTGCATGGACTGGTATACCCGTCGAAAAAGTGTCAACCGACGAGTCTGATCGACTTCTGAAAATGGAAGAGACCCTTCACAAGAGGGTCGTTGGACAGGATGAAGCCGTAAAAGCAATCAGCCGCGCTATTCGCCGAGCTCGTGTTGGACTGAAGAACCCCAATCGTCCAATCGCCAGCTTCATATTTTCTGGGCCAACTGGTGTTGGAAAATCTGAACTGGCCAAGGCCTTGGCTGCTTACTACTTTGGGTCTGAAGAAGCAATGATTCGGCTTGACATGAGTGAGTTTATGGAAAGGCACACCGTCTCTAAGCTCATTGGATCACCCCCAGGATATGTTGGTTACACGGAGGGTGGTCAACTGACAGAGGCTGTCAGACGCCGGCCATACACAGTGGTCCTCTTTGATGAGATTGAGAAGGCTCATCCGGACGTCTTCAACATGATGCTCCAAATTCTCGAGGACGGAAGATTGACTGACAGCAAGGGAAGAACTGTCGACTTTAAGAACACTCTTCTCATAATGACGTCAAACGTTGGAAGTAGCGTAATCGAGAAAGGAGGTCGGAGAATAGGATTTGATCTTGATTACGACGAGAAGGACAGCAGCTACAACCGAATCAAGAGCTTAGTGACTGAGGAACTGAAGCAATACTTCCGACCAGAGTTTTTGAACAGATTGGACGAGATGATCGTTTTCCGGCAGTTGACCAAGTTGGAAGTGAAAGAGATAGCCGATATAATGCTAAAGGAGGTTTTTGACAGGCTGAAGAGCAAAGAAATCGAACTTCAAGTGACCGAGAGGTTTAGAGATAGAGTGGTGGACGAAGGCTATAACCCGAGCTATGGGGCCCGGCCGTTGAGAAGGGCTATAATGAGACTATTGGAGGACAGTATGGCGGAGAAGATGCTGGCCCGGGAGATCAAGGAAGGTGACTCGGTCATTGTGGACGTCGACTCCGACGGCAACGTCACAGTTCTCAACGGCGGCAGTGGGGCTCAGGAGTCGTTGTCGGAGTCAATTCCTGTATAA 2757 46.17 MARVLVQSTNIPGLVSGQKDGQLRGPGNTKSAVRMMSSLQLPGLGMKGFSGLRGFNALDTMVRPGQDFHSKIAISLSSRRQRRATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGISQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVRVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYIRLCVLMDSIFLLNRSSQMSLSFIFFFQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMDLKAQISTLVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVVGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKSKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGGSGAQESLSESIPV 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10397329 10402285 - Bda012552.1 Bda15g00698 22393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00698 918 Pfam ATPase family associated with various cellular activities (AAA) 292 408 IPR003959 GO:0005524|GO:0016887
Bda15g00698 918 PANTHER ATP-DEPENDENT CLP PROTEASE 76 917 - -
Bda15g00698 918 Pfam C-terminal, D2-small domain, of ClpB protein 811 891 IPR019489 -
Bda15g00698 918 CDD AAA 270 422 - -
Bda15g00698 918 Gene3D - 240 430 IPR027417 -
Bda15g00698 918 ProSiteProfiles Clp repeat (R) domain profile. 93 236 IPR004176 -
Bda15g00698 918 CDD AAA 605 753 - -
Bda15g00698 918 ProSiteProfiles UVR domain profile. 505 540 IPR001943 GO:0005515
Bda15g00698 918 Pfam Clp amino terminal domain, pathogenicity island component 183 221 IPR004176 -
Bda15g00698 918 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Bda15g00698 918 ProSitePatterns Chaperonins clpA/B signature 1. 382 394 IPR018368 GO:0005524
Bda15g00698 918 Pfam AAA domain (Cdc48 subfamily) 630 804 IPR003959 GO:0005524|GO:0016887
Bda15g00698 918 SMART ClpB_D2_small_2 811 901 IPR019489 -
Bda15g00698 918 Gene3D - 431 486 - -
Bda15g00698 918 Pfam AAA lid domain 430 532 IPR041546 -
Bda15g00698 918 ProSitePatterns Chaperonins clpA/B signature 2. 665 683 IPR028299 -
Bda15g00698 918 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 76 917 - -
Bda15g00698 918 SUPERFAMILY Double Clp-N motif 94 221 IPR036628 -
Bda15g00698 918 SMART AAA_5 631 812 IPR003593 -
Bda15g00698 918 SMART AAA_5 287 427 IPR003593 -
Bda15g00698 918 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 709 727 IPR001270 GO:0005524
Bda15g00698 918 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 680 698 IPR001270 GO:0005524
Bda15g00698 918 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 742 756 IPR001270 GO:0005524
Bda15g00698 918 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 635 653 IPR001270 GO:0005524
Bda15g00698 918 Gene3D - 562 809 IPR027417 -
Bda15g00698 918 Coils Coil 341 361 - -
Bda15g00698 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 534 IPR027417 -
Bda15g00698 918 Gene3D - 811 909 - -
Bda15g00698 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 897 IPR027417 -
Bda15g00698 918 Coils Coil 497 521 - -
Bda15g00698 918 Gene3D - 92 233 IPR036628 -
Bda15g00698 918 Gene3D UVR domain 498 554 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00698 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - mnt:21388672 1571.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00709 Bda15g00698 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00871 Bda-Chr14:6743680 Bda15g00698 Bda-Chr15:10397329 0 dispersed
Bda14g00873 Bda-Chr14:6764480 Bda15g00698 Bda-Chr15:10397329 1.17E-157 dispersed
Bda15g00698 Bda-Chr15:10397329 Bda01g01010 Bda-Chr1:43664350 3.66E-100 dispersed
Bda05g00020 Bda-Chr5:1316311 Bda15g00698 Bda-Chr15:10397329 5.12E-09 transposed
Bda06g00056 Bda-Chr6:589183 Bda15g00698 Bda-Chr15:10397329 1.86E-12 transposed
Bda14g01528 Bda-Chr14:25293276 Bda15g00698 Bda-Chr15:10397329 9.84E-10 transposed
Bda15g00698 Bda-Chr15:10397329 Bda06g00709 Bda-Chr6:9764268 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00698 Bda_Chr15 FPKM 62.848709 57.133244 88.818871 77.23172 44.364147 39.182537 45.883732 73.405144 68.106354