Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00700 ATGGCGACCGCCGGACAACTGCCCTGCGACGGAGATGGCGTTTGCATGGCCTGTAAGGCGAAGCCACTGGAAGAGGAGAGCTTGACATGCAAAACTTGTGCTACTCCTTGGCATGTTAACTGTCTTTCCAGCCCCCCTGAAACCCTAGCTTCGACTCTTCAATGGGAGTGTCCCGACTGTGTTCCGCCTACCGGTGACTCTGCTATAAGCGAATGTGTCCCCGTCGATGCCTCCTCCAGTGGCCTGATCGCCGCTATCCGTGCGATTGAGGCTGATGCTTCGCTGACTGATGGACAGAAGGCGACGAGGCGTCAGGAGCTTTTGAGCGGCAAGAATCAGTCTGATGATGGTGGAGAGTCGTCGAGTAAGGATAAGAGGAAGAGAAGCGACGACGTTTTGGGAGTTCTTGATGAGAGCTTGAACTGTTCCTTCTGTATGCAGTTGCCTGAGAGGCCTGTCACGACTCCTTGTGGACACAATTTCTGCCTAAAATGCTTCCAAAAGTGGATTGGACAAGGAAAACAAACCTGCGCAAAATGTCGCTGCTTGATTCCTTCCAAAATGGCAAGTCAGCCTCGCATCAATTCTGCTCTCGTAGTTGCCATTCGTATGGCCAAGATGTCAAAGTCAAATGCAACTGGCGATTCTCAAAAAATTTATCATTTTGTACACAATCAGCATAGGCCGGACAAGGCATACACTACAGAGCGAGCCCAGAAAAGTGGGAAGGCCAATGCAGCAAGTGGGAAGATATTTGTTACTATCCCGTCTGATCATTTTGGACCCATCCCTGCTGAAAATGATCCTGGACGAAATCAGGGTGTGCTTGTTGGTGAAACTTGGGAGGACAGGTTGGAATGTCGACAATGGGGTGCTCACTTTCCTCATGTGGCGGGCATTGCAGGGCAGTCACACTATGGTGCACAGTCAGTAGTTCTTTCTGGAGGTTACCAAGATGATGAGGATCATGGAGAGTGGTTTCTCTACACTGGGAGCGGTGGTAGAGACCTTAGTGGCAACAAACGGACGAGCAAGGACCAGTCGTTTGACCAGCAATTCGAGAAAATGAATAAAGCACTCAAACTTAGTTGTTTGATGGGTTATCCTGTTAGGACTGGATTATACTTTTATACTCTTTCCATTTCTGTACTTTACTTTTTTTTTGATGCTAATTTTTTTATTAATTCGAGTAAATTTTTATTGTGGCAATATGAAATTTTATTCAGGTGGTTTTTTTTTGTAGTAAGACTTCAAAGTTTAGTTTGGCTTCTTAGACAATGGTTGTTATGTCATGTGATTCAAGTTGTGTATAGACTGCGTCGAGTCAAATATAAGGCAAATGACGAAATTTCTTATTGTCATATTGTAACTGGGGCACTGGAATTATTTTGTTCATTCATCTTGGTAGACTGGGATGCCAATGTGCATGCTTCAATAAACTGGTATATTAAACTTTCCCTCAATTATAGACATTTATTTTTTATTGGCAGGTCACACAAAGAGAAACGCTCTTCATATGCCCCTGAGAAAGGTTTGCGGTATGATGGAGTCTATAGAATTGAGAAATGTTGGCGAAAAGTGGGAGTTCAGGGTTTTAAGGTTTGCAGGTACTTGTTTGTCAGGTGTGACAATGAACCAGCTCCTTGGACTAGTGATGAACATGGAGATCGGCCCAGAGCCTTTCCTGGAATTGCAGAGTTAAAAAAAGCAACGGACATCACAGAGAGGAAGGGAAGTCCTTCGTGGGATTTCAATGTGGAAGATAATTGCTGGGTGTGGAAGAAACCTCCACCAGCAAGCAAGAAACCAATTGAAGTAGAAGGTTCTGATTCAAGAAAGAGATCAATAAGAGCAATCAGGAAAGCTCATAAAATGACTGTTAGAGAAAGATTGTTGAAAGAGTTCAGCTGCCTTATATGCCGACAGGTAATGGCTCAGCCCGTGACAACTCCCTGTGCGCATAATTTTTGCAAGGCATGCTTGGAAGCCCGGTTTGCTGACAAGACATTCATGAGAGACAGAAGCAAAGGTGGAAGGACACTTCGGTCCCAAAAGAATATCATGATTTGTCCTTCTTGTCCTTTGGACATCTCTGATTTTCTTCAAAATCCTCAGGTAAATAGGGAGTTACTTGATGTAATCGAAACACTAAAAAGTCAGAACGAAGAAAACGGCAATTCTGTTGATGAGTCATCCGAGGATGAAACCATTGATCAAGAGGAGAGCAAAGATAATACTGCCGAGACATCAGAGGTACCAAATAAGGATAATGAAGCCGAGGTGCATCCTAGTGAAGTGACTCCAAAAAGGGCTCAAAAGCGAATGAAAATCGATGAAACAGGGACTATCGATGCAGCCAAAAGTGGAGGCACAGGCAGGATTAACTGA 2388 44.43 MATAGQLPCDGDGVCMACKAKPLEEESLTCKTCATPWHVNCLSSPPETLASTLQWECPDCVPPTGDSAISECVPVDASSSGLIAAIRAIEADASLTDGQKATRRQELLSGKNQSDDGGESSSKDKRKRSDDVLGVLDESLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKQTCAKCRCLIPSKMASQPRINSALVVAIRMAKMSKSNATGDSQKIYHFVHNQHRPDKAYTTERAQKSGKANAASGKIFVTIPSDHFGPIPAENDPGRNQGVLVGETWEDRLECRQWGAHFPHVAGIAGQSHYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQQFEKMNKALKLSCLMGYPVRTGLYFYTLSISVLYFFFDANFFINSSKFLLWQYEILFRWFFFVVRLQSLVWLLRQWLLCHVIQVVYRLRRVKYKANDEISYCHIVTGALELFCSFILVDWDANVHASINWYIKLSLNYRHLFFIGRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGVQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRAFPGIAELKKATDITERKGSPSWDFNVEDNCWVWKKPPPASKKPIEVEGSDSRKRSIRAIRKAHKMTVRERLLKEFSCLICRQVMAQPVTTPCAHNFCKACLEARFADKTFMRDRSKGGRTLRSQKNIMICPSCPLDISDFLQNPQVNRELLDVIETLKSQNEENGNSVDESSEDETIDQEESKDNTAETSEVPNKDNEAEVHPSEVTPKRAQKRMKIDETGTIDAAKSGGTGRIN 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10433153 10438858 - Bda012554.1 Bda15g00700 22395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00700 795 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Bda15g00700 795 SUPERFAMILY RING/U-box 630 721 - -
Bda15g00700 795 CDD RING-HC 142 180 - -
Bda15g00700 795 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Bda15g00700 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 61 IPR013083 -
Bda15g00700 795 Gene3D - 492 577 IPR036987 -
Bda15g00700 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 742 IPR013083 -
Bda15g00700 795 SMART ring_2 142 180 IPR001841 -
Bda15g00700 795 SMART ring_2 15 60 IPR001841 -
Bda15g00700 795 SMART ring_2 637 693 IPR001841 -
Bda15g00700 795 MobiDBLite consensus disorder prediction 105 130 - -
Bda15g00700 795 Gene3D - 241 373 IPR036987 -
Bda15g00700 795 Pfam SAD/SRA domain 497 544 IPR003105 -
Bda15g00700 795 Pfam SAD/SRA domain 270 371 IPR003105 -
Bda15g00700 795 MobiDBLite consensus disorder prediction 742 781 - -
Bda15g00700 795 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 371 IPR045134 -
Bda15g00700 795 SUPERFAMILY PUA domain-like 244 372 IPR015947 -
Bda15g00700 795 SUPERFAMILY RING/U-box 133 188 - -
Bda15g00700 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 209 IPR013083 -
Bda15g00700 795 MobiDBLite consensus disorder prediction 718 795 - -
Bda15g00700 795 SUPERFAMILY PUA domain-like 480 575 IPR015947 -
Bda15g00700 795 ProSitePatterns Zinc finger RING-type signature. 652 661 IPR017907 -
Bda15g00700 795 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Bda15g00700 795 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 371 - -
Bda15g00700 795 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 491 778 - -
Bda15g00700 795 ProSiteProfiles Zinc finger RING-type profile. 637 693 IPR001841 -
Bda15g00700 795 Pfam RING-type zinc-finger 637 671 IPR027370 -
Bda15g00700 795 SUPERFAMILY FYVE/PHD zinc finger 6 65 IPR011011 -
Bda15g00700 795 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Bda15g00700 795 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 491 778 IPR045134 -
Bda15g00700 795 MobiDBLite consensus disorder prediction 727 741 - -
Bda15g00700 795 SMART G9a_1 265 403 IPR003105 -
Bda15g00700 795 SMART PHD_3 14 61 IPR001965 -
Bda15g00700 795 ProSiteProfiles YDG domain profile. 270 416 IPR003105 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00705 Bda15g00700 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00700 Bda-Chr15:10433153 Bda13g00032 Bda-Chr13:524843 2.54E-10 dispersed
Bda15g00700 Bda-Chr15:10433153 Bda06g00705 Bda-Chr6:9727526 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00700 K10638 - csv:116401648 607.06