Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00711 ATGAATAACATCAAACTATATGTGAGGAGAGTGTTCATCATGGATAACTGTGAAGAGCTCATTCCTGAATATCTCGGCTTTGTCAAGGGTGTCGTTGATTCAGATGATTTGCCACTCAACATTTCTCGTGAGATGCTTCAACAGAATAAGATCTTGAAGGTGATCAGGAAGAACTTGGTGAAGAAATGCATTGAAATGTTCAATGAGATTGCAGAGAACAAGGAGGACTACAACAAATTCTACGAGGCTTTTTCTAAGAACCTGAAATTAGGCATTCACGAAGACAGCCAAAACAGGTCCAAGATAGCAGATCTTCTCCGATACCACTCTACCAAGAGCGGTGATGAGGTGACTAGCCTGAAAGATTACGTTACGAGGATGAAGGAGGGACAGAAAGAGATCTACTACATTACCGGAGAGAGCAAGAAGGCTGTTGAGAACTCCCCATTTTTGGAGCGGCTTAAGAAGAGAGGATACGAAGTACTCTTCATGGTTGATGCCATTGACGAATATGCCGTTGGTCAGTTGAAAGAATACGATGGCAAGAAGCTAGTGTCGGCGACAAAGGAAGGCCTGAAACTTGATGAAACAGAGGAAGAGAAGAAGCAAAGGGAAGAAAAGAAGAAATCATTTGAGAATCTCTGCAAGACAATCAAGGACATCCTAGGAGACAAGGTAGAGAAAGTTGTGGTCTCCGACAGAATTGTGGACTCCCCCTGCTGTTTAGTGACAGGTGAATATGGCTGGTCGGCAAACATGGAGAGGATCATGAAAGCACAAGCTCTGAGAGACAGCAGCATGGGATCCTACATGTCGAGCAAGAAGACGATGGAAATAAACCCCGACAATGGGATAATGGAGGAGCTGAGGAAGAGGGCAGAGGTCGACAAGAACGACAAGTCTGTGAAAGATCTGGTGATGCTGCTTTTCGAGACGGCACTTCTGACATCTGGGTTCAGTCTAGATGATCCAAATACTTTCGCGGGAAGAATTCACAGGATGTTGAAGCTGGGATTGAGCATCGAAGAAGACGAGGGAGGCGTGGAAGATGAAGAAATGCCAGCGTTGGAAGAGGAGGGGGGAGAGGAGAGCAAAATGGAAGAGGTGGATTAA 1113 45.28 MNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLRYHSTKSGDEVTSLKDYVTRMKEGQKEIYYITGESKKAVENSPFLERLKKRGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDETEEEKKQREEKKKSFENLCKTIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMGSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVMLLFETALLTSGFSLDDPNTFAGRIHRMLKLGLSIEEDEGGVEDEEMPALEEEGGEESKMEEVD 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10518789 10519901 - Bda012565.2 Bda15g00711 22406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00711 370 SUPERFAMILY Ribosomal protein S5 domain 2-like 2 190 IPR020568 -
Bda15g00711 370 Gene3D - 190 340 IPR037196 -
Bda15g00711 370 Coils Coil 194 214 - -
Bda15g00711 370 Gene3D - 103 189 - -
Bda15g00711 370 Pfam Hsp90 protein 2 363 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bda15g00711 370 Gene3D - 1 102 - -
Bda15g00711 370 MobiDBLite consensus disorder prediction 342 370 - -
Bda15g00711 370 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 368 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bda15g00711 370 SUPERFAMILY HSP90 C-terminal domain 213 335 IPR037196 -
Bda15g00711 370 PANTHER HEAT SHOCK PROTEIN 83-LIKE 1 368 - -
Bda15g00711 370 MobiDBLite consensus disorder prediction 344 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00711 K04079 HSP90A, htpG; molecular chaperone HtpG - csin:114323954 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00671 Bda-Chr5:55026059 Bda15g00711 Bda-Chr15:10518789 0 dispersed
Bda15g00711 Bda-Chr15:10518789 Bda12g00984 Bda-Chr12:40972661 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00711 Bda_Chr15 FPKM 123.032303 129.64061 3.145602 2.91833 72.448517 79.321251 65.247772 3.653389 3.049126