Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00716 ATGGAAAGTCTTCACGAAATTTCACCAGGACCAGAAATTAACTGCTCAGATTCGGTTCTTGCTCGACAGGTTTGCGATCATGATGAACTCCGGACGGAGCTCGACTCTCTCCGGGAGGGCTATCGGAGTCTCGAATCGAAGCTTAGAGAGTTGGAGGATGCGAAGGTTGAGATTCAGAGTGAGAGAGATGATGAGGTGAATCGAAACGCGGAGTTAGTCAAAGGAATCGATGAGATTCGGAGAGAGAGGGAGTTTGTACGAAGTGAAGTTTCGAGGCTTGAAGCGGATTTGAGAGATAAAGAGGAAGCGTTCGCGAAAAGATTGGATGGGGAGGAGAAGGAGAAGGAGGAACTGAAGAACGAAGTGGAGGTTTGTAGGGAAAGGGTCGATAAATTGGAAAATGAGAGACAAGAGAAGAAAGAAGTTTTGAATAAACGTCTGGATTCACTAGTTTCAGCGAAGGATTGCTTGACGAGGGTAATTGAAGGAATCTGCGAAGGAAAAGTCAAAGATGGTGGAGAAGAAAGCGAGGAAATGGAGTTGGGATTGAAAATGGATGACGAATTAAGGCCACTTTCAGCTGGTATAGCGGAAGTGGACAGGCTTGCGAGGATGGTGGAGGTGAAGGTGGAAGAGTACAAAGAGCTCAGAAAGAAAGAGAAAAGAGAGTTGGAGAGTAGTTTAGTGAGTTTGACTGAGGAGAATCGTGATATTAACAGTCTGCTCCGGATTGCTCTGGTGGAGAAGGAGGCTGTAGAAAAGAGTTTAAATAGGTTGAAGGGGAATCCTGAGCAGAAGAGGGTGGCCCTTTTGCAGATTGCTGAGAGGGGGTTGCAGAGAGTTGGGTTCGGATTTATGATGGGTAGTGGTAATTATGAGCAGGCTGTAGACATTGCCGGAGTTAATGCGGGTAGTAAGGTCGATGAATCGGGTGCTAATTCAGAGACCAAGTCTGATAATAGTGAAAGTGAAGAAGAAGTTATCAGCTTGGCTTCAACTGTGGAGAAAATAATGAAGAATTTACGATTTGAAATCACTCAACTGAGGAGGTCGTTGGATGAATCTAGGTCAGACACAGAGCGCCTACAAAGTCTATGTGAAAAACAAACTCAAAGAATCGAAGAGAACTTTCTGTACATCAAGGAGTTGGAAGATCGAGAGAGGGTTTTGGTGCAAAATGTTGATGAACTTCTATTGGAAATAAAGGACGCTGAAACAGAGGTTGCCAGATGGAGGGAAGCTTGTGAACTAGAAGTTAAATTAGGAAAAAGTGAGATTATTGAACGTGACAAGGTGGTTACCATTTTGAAACAAGAGCTCGAGAAAACAAAGACCGCCTTAGAAATATCAAATGGGAAATTGCAGCTGAAAGAAGAACTTGTAGCTGCAGCCATGGCTGCCCAGGCAGCAGCCGAAAAGTCTCTGCAAGTAGCAGACAGCCGGGCTGCAGTGCTCCGAGAAAGGGCGGAGGAATTAACAAGACAACTAGAAGAAGCCGAGAGCAGAGAGCGGCAGAATCGAAGGGTCAGACGCTTGTGCTGGCCGTGGCGGGGCCCCAAGGTAAATACTCCTGCTAATTCAACAGATAATGTGAAACGTATGTTGCCTGAAATGCAGGCCCTGCTTCATTTCACCACCTGA 1641 45.7 MESLHEISPGPEINCSDSVLARQVCDHDELRTELDSLREGYRSLESKLRELEDAKVEIQSERDDEVNRNAELVKGIDEIRREREFVRSEVSRLEADLRDKEEAFAKRLDGEEKEKEELKNEVEVCRERVDKLENERQEKKEVLNKRLDSLVSAKDCLTRVIEGICEGKVKDGGEESEEMELGLKMDDELRPLSAGIAEVDRLARMVEVKVEEYKELRKKEKRELESSLVSLTEENRDINSLLRIALVEKEAVEKSLNRLKGNPEQKRVALLQIAERGLQRVGFGFMMGSGNYEQAVDIAGVNAGSKVDESGANSETKSDNSESEEEVISLASTVEKIMKNLRFEITQLRRSLDESRSDTERLQSLCEKQTQRIEENFLYIKELEDRERVLVQNVDELLLEIKDAETEVARWREACELEVKLGKSEIIERDKVVTILKQELEKTKTALEISNGKLQLKEELVAAAMAAQAAAEKSLQVADSRAAVLRERAEELTRQLEEAESRERQNRRVRRLCWPWRGPKVNTPANSTDNVKRMLPEMQALLHFTT 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10555658 10559100 - Bda012570.1 Bda15g00716 22411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00716 546 Coils Coil 437 457 - -
Bda15g00716 546 Coils Coil 27 68 - -
Bda15g00716 546 MobiDBLite consensus disorder prediction 306 325 - -
Bda15g00716 546 PANTHER OS08G0559800 PROTEIN 22 545 - -
Bda15g00716 546 Gene3D - 12 172 - -
Bda15g00716 546 Coils Coil 199 241 - -
Bda15g00716 546 PANTHER OS08G0559800 PROTEIN 22 545 IPR040300 -
Bda15g00716 546 Coils Coil 475 509 - -
Bda15g00716 546 Coils Coil 76 149 - -
Bda15g00716 546 Coils Coil 338 358 - -
Bda15g00716 546 Coils Coil 380 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00716 - - - tcc:18605588 540.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00981 Bda-Chr10:44063446 Bda15g00716 Bda-Chr15:10555658 1.24E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g715 Blo06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0078 Cone15ag0079 . . . . . . . Bda15g00716 . Bpe12g00436 Bma08g00297 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016619 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00716 Bda_Chr15 FPKM 11.347308 12.122171 15.074347 15.000073 14.848101 15.506247 15.380456 15.998347 14.381391