Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00727 ATGCGTGAGATTCTTCACATTCAAGGTGGTCAGTGCGGAAACCAAATCGGAGCCAAGTTTTGGGAAGTTGTCTGCGCCGAACATGGCATCGACTCAACTGGTAGGTCGCAGGGTGGTACTGAGGACTTGCAACTGGAGCGAGTGAATGTTTACTACAATGAAGCGAGTGGTGGCCGATTCGTTCCTCGTGCCGTTCTGATGGATCTCGAGCCAGGAACTATGGATGCTGTCAGAACTGGTCCTTACGGGCAAATATTCCGACCTGATAACTTTGTTTTTGGGCAGTCCGGTGCGGGTAATAACTGGGCCAAGGGTCATTACACAGAGGGCGCTGAGTTGATTGATTCAGTTCTAGATGTTGTGAGGAAGGAGGCTGAGAATTGTGACTGCTTGCAAGGCTTTCAAGTTTGCCACTCTTTAGGAGGTGGAACAGGGTCGGGCATGGGAACTCTTCTCATCTCCAAGATCAGAGAAGAATACCCGGATAGAATGATGCTCACTTTCTCTGTATTTCCTTCCCCCAAAGTTTCAGATACTGTTGTGGAACCCTACAATGCTACTCTTTCTGTTCACCAGCTCGTTGAGAACGCAGATGAGTGCATGGTTTTGGACAATGAGGCCCTCTATGACATTTGTTTTCGAACTCTGAAGCTCAGTACTCCTAGTTTTGGCGACCTTAATCATTTGATCTCTGCCACTATGAGTGGCGTTACTTGCTGCCTTCGTTTCCCCGGAGACCTGCGTAAACTTGCCGTCAATCTTATTCCATTCCCTCGGTTGCACTTCTTCATGGTTGGGTTTGCCCCTCTCACATCTCGTGGATCTCAGCAATACAGAGCACTAACAGTTCCTGAGCTGACACAACAAATGTGGGACGCAAAGAATATGATGTGCGCCGCTGATCCTCGTCATGGAAGGTACCTTACGGCCTCAGCCATGTTTCGAGGAAAAATGAGCACTAAAGAGGTCGATGAACAGATGATTAACGTACAGAACAAGAATTCATCCTACTTCGTTGAGTGGATTCCCAACAATGTGAAATCTACTGTGTGTGATATACCTCCAACTGGGTTGAAAATGGCGTCCACTTTTATAGGCAACTCTACGTCGATTCAAGAAATGTTTAGGAGGGTGAGTGAGCAGTTTACCGCCATGTTTAGAAGGAAGGCTTTCTTGCATTGGTACACTGGAGAGGGAATGGATGAGATGGAGTTTACAGAGGCTGAAAGCAATATGAATGATCTTGTTTCTGAATACCAGCAATATCAGGATGCAACTGCTGATGAAGATGGTTATGAGTATGAAGAGGAAGACGAAGCTCACGAGGAGGCTTAA 1335 46.89 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRSQGGTEDLQLERVNVYYNEASGGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEDGYEYEEEDEAHEEA 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10689961 10691773 - Bda012581.1 Bda15g00727 22422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00727 444 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 141 147 IPR017975 GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 Gene3D - 260 370 IPR037103 -
Bda15g00727 444 SMART Tubulin_4 48 245 IPR003008 GO:0005525
Bda15g00727 444 PANTHER TUBULIN 1 440 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Bda15g00727 444 SUPERFAMILY Tubulin C-terminal domain-like 246 426 IPR008280 -
Bda15g00727 444 Pfam Tubulin C-terminal domain 258 379 IPR018316 -
Bda15g00727 444 CDD beta_tubulin 2 423 - -
Bda15g00727 444 Gene3D Helix hairpin bin 371 427 IPR023123 -
Bda15g00727 444 MobiDBLite consensus disorder prediction 428 444 - -
Bda15g00727 444 PRINTS Beta-tubulin signature 308 326 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 89 100 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 374 385 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 153 165 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 344 367 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 213 225 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 262 278 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 109 127 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 326 340 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 42 59 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Beta-tubulin signature 409 427 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bda15g00727 444 Coils Coil 405 425 - -
Bda15g00727 444 PANTHER TUBULIN BETA-8 CHAIN 1 440 - -
Bda15g00727 444 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Bda15g00727 444 SMART Tubulin_C_4 246 380 IPR018316 -
Bda15g00727 444 Gene3D Tubulin/FtsZ, GTPase domain 1 259 IPR036525 -
Bda15g00727 444 PRINTS Tubulin signature 94 105 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Tubulin signature 107 131 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Tubulin signature 152 173 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Tubulin signature 177 190 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Tubulin signature 191 211 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Tubulin signature 52 71 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Tubulin signature 133 151 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 PRINTS Tubulin signature 367 395 IPR000217 GO:0005874|GO:0007017
Bda15g00727 444 MobiDBLite consensus disorder prediction 420 444 - -
Bda15g00727 444 Pfam Tubulin/FtsZ family, GTPase domain 3 212 IPR003008 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00727 K07375 TUBB; tubulin beta - twl:119984060 837.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00078 Bda15g00727 CCT
Bda05g00078 Bda15g00727 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00078 Bda-Chr5:3792212 Bda15g00727 Bda-Chr15:10689961 0 dispersed
Bda08g01218 Bda-Chr8:50018721 Bda15g00727 Bda-Chr15:10689961 0 dispersed
Bda15g00727 Bda-Chr15:10689961 Bda06g01169 Bda-Chr6:41122368 2.02E-121 dispersed
Bda15g00727 Bda-Chr15:10689961 Bda01g00482 Bda-Chr1:31887075 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g688 . . Bda05g00078 . Bpe03g00285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00284 . . Blo07g00408 Blo09g00113 . Bda15g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00727 Bda_Chr15 FPKM 0.75443 1.139785 10.685327 11.369224 1.499855 1.621806 1.09297 3.974014 4.375285