Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00728 TTACAGATGGTGGAGGTGCTAGTGCCAAACCTGGACTGTGAAGGGTGTGCTTCTAAGCTGAGGAAAGCTCTGTTGAAGCTTAAGGCAGGAGTGGAAGAAGTAGAAGTGGAGATGAAGATGCAGAAGATAACAGTGAGAGGGTACGGAATCGAGGAAAAGAAAGTGGTGAAATCCATTAAAAGAGCTGGAAAAGCAGCAGAGCCATGGCCGTTTCCAGGGTTTTCTCAACACTTGACGTCTTTCTACAAATATCCTTCTCACGTCGTCAACCATTACTACTTCGAAGCTTTCAACAATGGAGGTTCCAGTGGGGTCCACACCTTTTTCCATACTCCTTCTCTCTACTCCCTCGCTGTCTCCTCTGATGAAGCTGTTTCTTCTCTTTTCAGTGATGATAATCCCCATGCTTGTTCTATTATG 420 45.48 LQMVEVLVPNLDCEGCASKLRKALLKLKAGVEEVEVEMKMQKITVRGYGIEEKKVVKSIKRAGKAAEPWPFPGFSQHLTSFYKYPSHVVNHYYFEAFNNGGSSGVHTFFHTPSLYSLAVSSDEAVSSLFSDDNPHACSIM 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10705365 10705886 + Bda033311 Bda15g00728 22423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00728 140 ProSitePatterns Heavy-metal-associated domain. 8 36 IPR017969 GO:0046872
Bda15g00728 140 Gene3D - 2 67 - -
Bda15g00728 140 Coils Coil 17 37 - -
Bda15g00728 140 ProSiteProfiles Heavy-metal-associated domain profile. 3 68 IPR006121 GO:0046872
Bda15g00728 140 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 140 IPR045181 GO:0046872
Bda15g00728 140 Pfam Heavy-metal-associated domain 6 64 IPR006121 GO:0046872
Bda15g00728 140 CDD HMA 8 67 IPR006121 GO:0046872
Bda15g00728 140 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 31 2 140 - -
Bda15g00728 140 SUPERFAMILY HMA, heavy metal-associated domain 3 70 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00728 - - - mesc:110600320 204.912
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00682 Bda15g00728 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00728 Bda-Chr15:10705365 Bda14g01631 Bda-Chr14:41792023 2.72E-26 dispersed
Bda15g00728 Bda-Chr15:10705365 Bda06g00682 Bda-Chr6:9442432 1.34E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g668 Blo06g01124 . . . . Bpe07g00939 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0090 . . . . . . Bda06g00682 Bda15g00728 . Bpe12g00434 . Bma12g01122 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008162 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00728 Bda_Chr15 FPKM 41.577251 42.292351 33.488487 29.048151 65.514778 68.293129 63.765377 25.873213 29.190132