Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00729 ATGGCTCAGAAGGTAGTTTTGAAAGTGATGACCATGACTGATGAAAAAACAAAGCAGAAAGCCATTGAAGCAGCTGCAGATATCTACGGGGTGGATTCAATCGCAGCAGATCTGAAGGAGCAGAAGCTGACGGTGATTGGATCAATGGATGCAGTGAAGATAGTGAAGAGATTGAAGAAAGTAGGGAAGGTGGATATCGTATCAGTTGGACCTGCTAAAGAGGAAAAGAAAGAAGAGAAGGAGGAGGATGCAAAGGAGGAGAAGAAAGCTGATGAGAAAAAATAA 285 42.81 MAQKVVLKVMTMTDEKTKQKAIEAAADIYGVDSIAADLKEQKLTVIGSMDAVKIVKRLKKVGKVDIVSVGPAKEEKKEEKEEDAKEEKKADEKK 94
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10721870 10722335 + Bda012583.1 Bda15g00729 22424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00729 94 MobiDBLite consensus disorder prediction 71 94 - -
Bda15g00729 94 SUPERFAMILY HMA, heavy metal-associated domain 2 63 IPR036163 GO:0046872
Bda15g00729 94 Pfam Heavy-metal-associated domain 7 63 IPR006121 GO:0046872
Bda15g00729 94 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 2 94 - -
Bda15g00729 94 PANTHER PROTEIN PXR1-LIKE ISOFORM X1 2 94 - -
Bda15g00729 94 Gene3D - 1 75 - -
Bda15g00729 94 Coils Coil 73 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00729 - - - csv:101208339 129.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00681 Bda15g00729 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00238 Bda-Chr11:2863719 Bda15g00729 Bda-Chr15:10721870 7.91E-07 dispersed
Bda13g00356 Bda-Chr13:4427601 Bda15g00729 Bda-Chr15:10721870 8.02E-15 dispersed
Bda15g00729 Bda-Chr15:10721870 Bda06g00638 Bda-Chr6:8873102 1.14E-41 wgd
Bda15g00729 Bda-Chr15:10721870 Bda06g00681 Bda-Chr6:9440978 2.55E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g667 Blo06g01123 Blo15g00165 . . . Bpe07g00940 . . . . Cma02g01066 . Car02g00810 . . Cpe05g00653 . . . . . . . . . . . . . . . Cone1ag1156 . Cone14ag0087 Cone15ag0091 . . . . . . Bda06g00681 Bda15g00729 . . . Bma12g01123 . Cmo02g01084 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004263 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 1 0 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00729 Bda_Chr15 FPKM 0.0 0.0 0.295205 0.0 0.0 0.0 0.17809 0.0 0.193767