Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00733 ATGAAAAACTTATCCACCATTTTCAATCAAGATCTCCAAAACCCAGATGCAGAAGGAGAAGAAAAGCGAAACCCAGAAGAAGACGATGAAGAAGAAAGAGCTAGATGCGAATGGGACATCAGTTTGGCTACCGTTGTTTCTGCCACCTCCACTAAAGCCGGGTCAGACACTCTCGGAGTTACAGAGTTCGACCCCACTGATTCCATTTTGGCCACCGGAGGAATCGCCAGGAAGATTCGAATTTACAGTCTGAGTTCTCTGTTGCCCCACAGCGAAAGTTTCTCCGGCGAGAATCACAGTGTTTCTCTTTTGGATCACGACGAAGCTTGTAGCTTTTATATATGTACGCCGGCGAAGCTAAGCAGTCTCCGGTGGCGACCTGGAGAAAACGGGCGTGTCTTGGGTTCCGGCGACTACGACGGGGTGGTGACGGAGTACGATCTTGAACGGAAAGTACCCGTCTTCGAGCGCGACGAACACGGCGGGCGGCGAGTTTGGAGCGTCGATTATTCGAATTCGGATCCGGTTGTGGGAGCATCCGGGTCGGATGATGGAACTATGCAGACGTGGGACCCGCGGTGTGAGAGTGGGGAATGTGTGGCTAAGGTACAGCCCAGCTTAACAGGTAGTCCAGTATGTTGTGTAGAGTTCAATCCCTTCAGTGGATCAATCCTAGCCGTCGGATGCGCTGACCAAAAGGCATATGTATACGATACGCGGAAAATGGTCGATCCCGTTAATGTATTCGACGGGCATAGTAAAACCGTGACACACATTAGATTTCTTGACATTTCTACAATGATATCAGCCAGTACAGACGGGTGTTTAAAATTATGGGACGTAGAAAATTCTTGTCTGAAACGAACGTACAAAGGGCACATGAATAATCGAAACTTCGTTGGGTTATCGGTGTGGAGAAACGGGGGGCTAATAGGGTGCGGGTCGGAAAATAACCAAGTGGTTGTGTACGATAAAAGGTGGGGGAGAAGAATTTGGGATCATGAGTTCGAGCCGGTGGGTGCGGCCGGGTCGAGCCATCGGTTAGTGAGTAGTGTCTGTTGGAGGCAATTGGGGGTGGACCAGTGCACTCTAGTGGCAGCTGGGTCAGATGGGGTTTTGCAAGTATTTGTTGGCAAAAGGAAGTCACTTTAA 1152 49.83 MKNLSTIFNQDLQNPDAEGEEKRNPEEDDEEERARCEWDISLATVVSATSTKAGSDTLGVTEFDPTDSILATGGIARKIRIYSLSSLLPHSESFSGENHSVSLLDHDEACSFYICTPAKLSSLRWRPGENGRVLGSGDYDGVVTEYDLERKVPVFERDEHGGRRVWSVDYSNSDPVVGASGSDDGTMQTWDPRCESGECVAKVQPSLTGSPVCCVEFNPFSGSILAVGCADQKAYVYDTRKMVDPVNVFDGHSKTVTHIRFLDISTMISASTDGCLKLWDVENSCLKRTYKGHMNNRNFVGLSVWRNGGLIGCGSENNQVVVYDKRWGRRIWDHEFEPVGAAGSSHRLVSSVCWRQLGVDQCTLVAAGSDGVLQVFVGKRKSL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10813574 10814725 - Bda012588.1 Bda15g00733 22428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00733 383 Gene3D - 37 377 IPR015943 GO:0005515
Bda15g00733 383 SUPERFAMILY WD40 repeat-like 61 376 IPR036322 GO:0005515
Bda15g00733 383 SMART WD40_4 150 191 IPR001680 GO:0005515
Bda15g00733 383 SMART WD40_4 335 377 IPR001680 GO:0005515
Bda15g00733 383 SMART WD40_4 106 147 IPR001680 GO:0005515
Bda15g00733 383 SMART WD40_4 283 324 IPR001680 GO:0005515
Bda15g00733 383 SMART WD40_4 242 280 IPR001680 GO:0005515
Bda15g00733 383 SMART WD40_4 196 238 IPR001680 GO:0005515
Bda15g00733 383 SMART WD40_4 44 83 IPR001680 GO:0005515
Bda15g00733 383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 283 - -
Bda15g00733 383 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Bda15g00733 383 Pfam WD domain, G-beta repeat 245 280 IPR001680 GO:0005515
Bda15g00733 383 Pfam WD domain, G-beta repeat 159 191 IPR001680 GO:0005515
Bda15g00733 383 PANTHER WD REPEAT-CONTAINING PROTEIN RUP1 4 381 IPR044616 -
Bda15g00733 383 MobiDBLite consensus disorder prediction 1 34 - -
Bda15g00733 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 289 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00733 K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] - jre:108998670 546.199
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00679 Bda15g00733 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00507 Bda-Chr9:6716292 Bda15g00733 Bda-Chr15:10813574 1.23E-47 dispersed
Bda12g00841 Bda-Chr12:38051704 Bda15g00733 Bda-Chr15:10813574 3.64E-50 dispersed
Bda15g00733 Bda-Chr15:10813574 Bda15g00066 Bda-Chr15:2339049 3.89E-09 dispersed
Bda15g00551 Bda-Chr15:8660698 Bda15g00733 Bda-Chr15:10813574 2.11E-06 transposed
Bda15g00562 Bda-Chr15:8762347 Bda15g00733 Bda-Chr15:10813574 2.17E-06 transposed
Bda15g00733 Bda-Chr15:10813574 Bda06g00639 Bda-Chr6:8900321 1.13E-116 wgd
Bda15g00733 Bda-Chr15:10813574 Bda06g00679 Bda-Chr6:9417061 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g656 . Blo15g00164 . . . Bpe07g00941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda06g00679 Bda15g00733 . Bpe12g00423 Bma08g00337 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008150 3 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00733 Bda_Chr15 FPKM 0.339321 0.557291 3.12417 3.506942 2.087049 1.226158 2.21152 4.577577 5.851358