Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00735 ATGGGTAATTCATTTGGGTGTTCTGCTTCGGGGGAGAGACTGGTATCGGCTGCAAGAGATGGGGATTTGGTGGAGGCCAAAATGTTATTGGATTTCAACCCTTGCCTGGCCAAGTACTCCACTTTCGGCGGCCTCAATTCTCCTCTCCATTTTGCTGCCGCCAAGGGCCACAATGAGATTGTTGCCTTGTTGCTAGAAAATGGAGCCGATGTTAATTCCAGAAATTATTGCGGCCAGACAGCTTTAATGCAAGCTTGTCGATACGGACACTGGGAAGTTATACAAACTCTTCTTCTTTTTAGGTGTAATGCTACTAGAGCAGACTACCTGAGTGGCCGGACTGCTCTTCATTTTACTGCGTTAAATGGTCATGTACGATGCATGAGACTTGTTGTAGCTGATTTCATTCCGAGTGCTCCTTATGAAGCGATAAATGCCAAGATAAACGGCAACAGAGCTGATGACTCAAATTGCAGTGTGTTGTCGAAATTCGTAAATAAGGCAGCCGATGGAGGTATCACCGCTCTTCACATGGCAGCCTTAAACGGGTACTTTGATTGTGTTCAACTCTTGCTCGATCTTCAGGCCAACGTTTCGGCCGTGACATTTCATTATGGAACATCAATGGATTTGATTGGAGCCGGAAGCACTCCTTTGCATTATGCTGCTTGTGGGGGTAATTTGAAGTGTTGTCAGGCAAGAATCTGTGCTTCTCGATTGACTTTAAACTGTAACGGATGGCTTCCATTAGACGTAGCTAGAATGTGGGGCCGCCATTGGCTCGAACCACTTCTACTACCCAATTCGGATTCCTCCTTACCTCCATTTCCTGTGTCTAGTTACCTATCGTTGCCTCTCTTGAGCATTCTTAACATCGCAAGAGATTTTGGATACAAGTCTATCACTGCGACAAACGACGATGTGGACACGTGTGCCGTGTGTTTAGAGAGAGTATGCTCTGTAGCAGCCGAAGGATGTGGTCACGAACTATGCGTAAGATGCGCATTATATCTTTGTTCGACAAGTAATCTCTCGTCGGAAATAGTTAATCCACTCGGGTCTATTCCGTGTCCTCTATGTCGGCAAGGAATAATCTCGTTTGTCAAATTACCATCTTCTCCGGCGAAGGAGAAACAATCGCACCTTTCATTGGCACTCTGTACCCCATGCATGCTTCATAGTCGGGACACGGAATCTCCTGATCGTACGAGCCCAATCAAGAAGAACAATCACGAGCCATCCGATTCTTCGGAATTATTTTGCCCTCTTACTTGTACCCCATTTCCTTCGGTTACCATTCCGTTATGCACATGCCAAGACGTTCCTTGTTCGTCTTTCGAGCCGCATGAAATTGAATCACAAAACACATCGACGGCTGAGGATAAATTGGATGGTTCTAGACTCGAAAGAACGAGCTGTTCGAGTATGTTTTGGGGGAGGAGAAGCTGCAGCCGAGAGAATCAGTGCAATTCGGAAATCAACGCTTGA 1488 46.17 MGNSFGCSASGERLVSAARDGDLVEAKMLLDFNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVIQTLLLFRCNATRADYLSGRTALHFTALNGHVRCMRLVVADFIPSAPYEAINAKINGNRADDSNCSVLSKFVNKAADGGITALHMAALNGYFDCVQLLLDLQANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARICASRLTLNCNGWLPLDVARMWGRHWLEPLLLPNSDSSLPPFPVSSYLSLPLLSILNIARDFGYKSITATNDDVDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNLSSEIVNPLGSIPCPLCRQGIISFVKLPSSPAKEKQSHLSLALCTPCMLHSRDTESPDRTSPIKKNNHEPSDSSELFCPLTCTPFPSVTIPLCTCQDVPCSSFEPHEIESQNTSTAEDKLDGSRLERTSCSSMFWGRRSCSRENQCNSEINA 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10831044 10833983 - Bda012591.1 Bda15g00735 22430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00735 495 ProSitePatterns Zinc finger RING-type signature. 326 335 IPR017907 -
Bda15g00735 495 ProSiteProfiles Ankyrin repeat region circular profile. 171 200 - -
Bda15g00735 495 MobiDBLite consensus disorder prediction 395 414 - -
Bda15g00735 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 369 IPR013083 -
Bda15g00735 495 ProSiteProfiles Ankyrin repeat profile. 171 203 IPR002110 GO:0005515
Bda15g00735 495 SUPERFAMILY RING/U-box 306 367 - -
Bda15g00735 495 Gene3D - 8 145 IPR036770 -
Bda15g00735 495 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Bda15g00735 495 Pfam Ankyrin repeats (3 copies) 14 75 IPR002110 GO:0005515
Bda15g00735 495 Pfam Ankyrin repeats (3 copies) 82 199 IPR002110 GO:0005515
Bda15g00735 495 PANTHER HOMEOBOX PROTEIN WARIAI 1 495 - -
Bda15g00735 495 ProSiteProfiles Zinc finger RING-type profile. 311 361 IPR001841 -
Bda15g00735 495 SMART ANK_2a 111 141 IPR002110 GO:0005515
Bda15g00735 495 SMART ANK_2a 171 200 IPR002110 GO:0005515
Bda15g00735 495 SMART ANK_2a 214 244 IPR002110 GO:0005515
Bda15g00735 495 SMART ANK_2a 77 106 IPR002110 GO:0005515
Bda15g00735 495 SMART ANK_2a 44 73 IPR002110 GO:0005515
Bda15g00735 495 MobiDBLite consensus disorder prediction 395 415 - -
Bda15g00735 495 Gene3D - 146 271 IPR036770 -
Bda15g00735 495 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Bda15g00735 495 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 495 - -
Bda15g00735 495 SUPERFAMILY Ankyrin repeat 15 267 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00735 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - tcc:18605520 804.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01502 Bda-Chr9:46810615 Bda15g00735 Bda-Chr15:10831044 7.93E-31 dispersed
Bda11g00028 Bda-Chr11:387767 Bda15g00735 Bda-Chr15:10831044 2.66E-142 dispersed
Bda15g00735 Bda-Chr15:10831044 Bda11g00069 Bda-Chr11:868307 9.96E-11 dispersed
Bda15g00735 Bda-Chr15:10831044 Bda02g00819 Bda-Chr2:48778794 5.53E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00735 Bda_Chr15 FPKM 13.067198 16.076149 3.510115 3.755569 20.384499 17.565176 19.141527 0.171859 0.202487