Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00737 ATGGGAGCTGTTTTTGCCAAAGACCTGGCTGAACATGGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCGTTGAAATCCCAGTTCGGGGACTTACCAGAGAGCTGTATTTCGGAGATTTTCATGTACTTAGACCCACCCGATATCTGTAAATTGGCCCGATTGAACCGCGCTTCCCGCGATGCCTCTTTTGCTGATTTTGTTTGGGAATCAAAGCTGCCTTCGAATTATAAGTTTCTTGTGAAGAAATTTGGCGATCAAGATGCTGATTACATGTGCAAGAAAGATGTTTATGCCCGATTATGTCGACCTAATCGATTCGACAAAGGCAAACAAGAATTCTGGTTAGACAAGGGTTCTGGTAAAATCTTCTTGGCGATTTCGTCCAAAGCTTTGAAGATAACTGGAATTGATGATAGAAGATATTGGAATCATATTCCATCCGAAGAATCCAGGTTTAATTCGGTGGCATATCTCAAACAAATCTGGTGGGTAGAAATCTTAGGAGAATTAGAGTTCGAGTTTCCACCCGGAAGCTACAGCGTATATTTCCGGCTCCAGCTCGGGAAAACCTCGAGAAGATTTGGCAGAAGAATCGCAGAACTTGATCAGGTCCATGGTTGGGATATAAAACCGGTTAGATTTCAACTCTCAGCCTCTAACGGCCAAAATGCCATATCGGAATGTTATTTGGATCAACTTGGCAACTGGGTCGATTACCTCGTCGGCGATTTTACCGTCGATAATCCATACTCGCTCATGAAGATCAAGTTTTCGATGATTCAAATCGATTGTACGCATACAAAAGGCGGTTTGTGCATAGATTCGGTGTTTATAAGACCGAAAATTGGGGGGAAAGGTTGA 873 42.61 MGAVFAKDLAEHGSSSSSSSSSSSSSPLKSQFGDLPESCISEIFMYLDPPDICKLARLNRASRDASFADFVWESKLPSNYKFLVKKFGDQDADYMCKKDVYARLCRPNRFDKGKQEFWLDKGSGKIFLAISSKALKITGIDDRRYWNHIPSEESRFNSVAYLKQIWWVEILGELEFEFPPGSYSVYFRLQLGKTSRRFGRRIAELDQVHGWDIKPVRFQLSASNGQNAISECYLDQLGNWVDYLVGDFTVDNPYSLMKIKFSMIQIDCTHTKGGLCIDSVFIRPKIGGKG 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10864690 10866808 + Bda012593.1 Bda15g00737 22432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00737 290 PANTHER F-BOX PROTEIN PP2-A14 14 285 - -
Bda15g00737 290 MobiDBLite consensus disorder prediction 11 29 - -
Bda15g00737 290 Gene3D - 20 118 - -
Bda15g00737 290 ProSiteProfiles F-box domain profile. 29 75 IPR001810 GO:0005515
Bda15g00737 290 Pfam Phloem protein 2 128 284 IPR025886 -
Bda15g00737 290 PANTHER F-BOX PROTEIN PP2-A15 14 285 - -
Bda15g00737 290 MobiDBLite consensus disorder prediction 1 29 - -
Bda15g00737 290 SUPERFAMILY F-box domain 30 106 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00737 - - - qsu:112033932 404.445
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00670 Bda15g00737 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00074 Bda-Chr6:746604 Bda15g00737 Bda-Chr15:10864690 7.47E-30 dispersed
Bda01g00774 Bda-Chr1:35942387 Bda15g00737 Bda-Chr15:10864690 2.62E-14 transposed
Bda03g01225 Bda-Chr3:15783238 Bda15g00737 Bda-Chr15:10864690 3.92E-113 transposed
Bda13g01220 Bda-Chr13:27886035 Bda15g00737 Bda-Chr15:10864690 5.61E-89 transposed
Bda15g00434 Bda-Chr15:7350322 Bda15g00737 Bda-Chr15:10864690 0 transposed
Bda15g00737 Bda-Chr15:10864690 Bda06g00648 Bda-Chr6:8964925 8.92E-166 wgd
Bda15g00737 Bda-Chr15:10864690 Bda06g00668 Bda-Chr6:9300356 6.49E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g604 Blo06g01114 . . . . Bpe07g00950 . . . . . . . . . . . . . . . . . . Cla01g00547 Cam01g0572 Cec01g0562 Cco01g0588 Clacu01g0566 Cmu01g0538 Cre09g1969 . . . . . Csa05g00583 Chy09g00923 . . . Bda06g00670 Bda15g00737 . Bpe12g00417 Bma08g00341 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00591 . . Cme09g01452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00737 Bda_Chr15 FPKM 15.129412 10.819112 20.753841 20.212843 3.024642 2.589588 4.155986 41.845284 41.953121