Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00745 ATGGTAAGAGGAAAAATCCAGATGAAAAAAATAGAAAATTCTGCAAGTAGGCAAGTAACGTTTTCCAAAAGAAGAAATGGGCTGCTGAAAAAAGCTTACGAGCTCTCTGTGCTGTGTGATGCTGAAGTTGCTGTCATCATTTTCTCTCAGAAAGGCAGACTCTTTGAATTTTCAAGCTCTGATATTCAAAAGACAATAGAACGATATCAGAAGCATGCAGACGAACGACGGGGTGGGAAGGTTGACATGCATCTCTATATCGAGCAACTGAAGCATGAAGTTTCAGGCATTGCTAAACAGATTGAGCAACTAGAAGAATCAAAAAGAAAACTAATGGGACATGGATTGGATAATTGTTCAAATGAAGAGCTGCAGGAGATTGAGACGCAGTTGGAGAAGAGCTTATCTTGCATTAGGCAAAGAAAGGATCATCTGTTCAAAGAACAAATCGAGCAACTAAAAGCAAAGGAGAGACTTCTTTTAGAAGAAAATGCAAAGTTATCTATGCAGTGTGGTGGAAAAGTAATGGGGGGAACAGCTGCAAGTGTAGACACGAAGGCGGATGCATCCTACAACAAATGCAGCCAAAGTTCACAAGCAGACACCCAATTGTTCATTGGATTTCGTTACTTATAA 636 39.94 MVRGKIQMKKIENSASRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLFEFSSSDIQKTIERYQKHADERRGGKVDMHLYIEQLKHEVSGIAKQIEQLEESKRKLMGHGLDNCSNEELQEIETQLEKSLSCIRQRKDHLFKEQIEQLKAKERLLLEENAKLSMQCGGKVMGGTAASVDTKADASYNKCSQSSQADTQLFIGFRYL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10917908 10920964 + Bda012601.1 Bda15g00745 22440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00745 211 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda15g00745 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda15g00745 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda15g00745 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda15g00745 211 Coils Coil 150 170 - -
Bda15g00745 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda15g00745 211 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Bda15g00745 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda15g00745 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda15g00745 211 Coils Coil 87 107 - -
Bda15g00745 211 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Bda15g00745 211 PANTHER MADS BOX PROTEIN 1 208 - -
Bda15g00745 211 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Bda15g00745 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda15g00745 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda15g00745 211 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Bda15g00745 211 Coils Coil 121 141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00042 Bda15g00745 CCT
Bda05g00042 Bda15g00745 ECH
Bda06g00660 Bda15g00745 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00042 Bda-Chr5:2762199 Bda15g00745 Bda-Chr15:10917908 5.44E-62 dispersed
Bda13g01357 Bda-Chr13:35968082 Bda15g00745 Bda-Chr15:10917908 8.35E-36 dispersed
Bda15g00745 Bda-Chr15:10917908 Bda13g01744 Bda-Chr13:40767458 1.92E-43 dispersed
Bda01g01403 Bda-Chr1:49939670 Bda15g00745 Bda-Chr15:10917908 3.83E-17 transposed
Bda06g01041 Bda-Chr6:36625129 Bda15g00745 Bda-Chr15:10917908 8.98E-09 transposed
Bda07g01089 Bda-Chr7:12790694 Bda15g00745 Bda-Chr15:10917908 1.33E-13 transposed
Bda09g00067 Bda-Chr9:1308912 Bda15g00745 Bda-Chr15:10917908 6.98E-64 transposed
Bda09g01181 Bda-Chr9:42771629 Bda15g00745 Bda-Chr15:10917908 3.47E-13 transposed
Bda14g01027 Bda-Chr14:8651581 Bda15g00745 Bda-Chr15:10917908 1.16E-30 transposed
Bda15g00745 Bda-Chr15:10917908 Bda06g00660 Bda-Chr6:9234513 9.68E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17208 PF01486 K-box 4.60E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00745 - - fve:101305891 241.121