Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda15g00745 | ATGGTAAGAGGAAAAATCCAGATGAAAAAAATAGAAAATTCTGCAAGTAGGCAAGTAACGTTTTCCAAAAGAAGAAATGGGCTGCTGAAAAAAGCTTACGAGCTCTCTGTGCTGTGTGATGCTGAAGTTGCTGTCATCATTTTCTCTCAGAAAGGCAGACTCTTTGAATTTTCAAGCTCTGATATTCAAAAGACAATAGAACGATATCAGAAGCATGCAGACGAACGACGGGGTGGGAAGGTTGACATGCATCTCTATATCGAGCAACTGAAGCATGAAGTTTCAGGCATTGCTAAACAGATTGAGCAACTAGAAGAATCAAAAAGAAAACTAATGGGACATGGATTGGATAATTGTTCAAATGAAGAGCTGCAGGAGATTGAGACGCAGTTGGAGAAGAGCTTATCTTGCATTAGGCAAAGAAAGGATCATCTGTTCAAAGAACAAATCGAGCAACTAAAAGCAAAGGAGAGACTTCTTTTAGAAGAAAATGCAAAGTTATCTATGCAGTGTGGTGGAAAAGTAATGGGGGGAACAGCTGCAAGTGTAGACACGAAGGCGGATGCATCCTACAACAAATGCAGCCAAAGTTCACAAGCAGACACCCAATTGTTCATTGGATTTCGTTACTTATAA | 636 | 39.94 | MVRGKIQMKKIENSASRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLFEFSSSDIQKTIERYQKHADERRGGKVDMHLYIEQLKHEVSGIAKQIEQLEESKRKLMGHGLDNCSNEELQEIETQLEKSLSCIRQRKDHLFKEQIEQLKAKERLLLEENAKLSMQCGGKVMGGTAASVDTKADASYNKCSQSSQADTQLFIGFRYL | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 10917908 | 10920964 | + | Bda012601.1 | Bda15g00745 | 22440 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda15g00745 | 211 | Pfam | K-box region | 88 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda15g00745 | 211 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | Coils | Coil | 150 | 170 | - | - | |
Bda15g00745 | 211 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 208 | - | - | |
Bda15g00745 | 211 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | Coils | Coil | 87 | 107 | - | - | |
Bda15g00745 | 211 | SUPERFAMILY | SRF-like | 3 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | PANTHER | MADS BOX PROTEIN | 1 | 208 | - | - | |
Bda15g00745 | 211 | CDD | MADS_MEF2_like | 3 | 77 | IPR033896 | GO:0000977|GO:0045944 | |
Bda15g00745 | 211 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda15g00745 | 211 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | Gene3D | - | 14 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Bda15g00745 | 211 | Coils | Coil | 121 | 141 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda05g00042 | Bda15g00745 | CCT | |
Bda05g00042 | Bda15g00745 | ECH | |
Bda06g00660 | Bda15g00745 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda05g00042 | Bda-Chr5:2762199 | Bda15g00745 | Bda-Chr15:10917908 | 5.44E-62 | dispersed | |
Bda13g01357 | Bda-Chr13:35968082 | Bda15g00745 | Bda-Chr15:10917908 | 8.35E-36 | dispersed | |
Bda15g00745 | Bda-Chr15:10917908 | Bda13g01744 | Bda-Chr13:40767458 | 1.92E-43 | dispersed | |
Bda01g01403 | Bda-Chr1:49939670 | Bda15g00745 | Bda-Chr15:10917908 | 3.83E-17 | transposed | |
Bda06g01041 | Bda-Chr6:36625129 | Bda15g00745 | Bda-Chr15:10917908 | 8.98E-09 | transposed | |
Bda07g01089 | Bda-Chr7:12790694 | Bda15g00745 | Bda-Chr15:10917908 | 1.33E-13 | transposed | |
Bda09g00067 | Bda-Chr9:1308912 | Bda15g00745 | Bda-Chr15:10917908 | 6.98E-64 | transposed | |
Bda09g01181 | Bda-Chr9:42771629 | Bda15g00745 | Bda-Chr15:10917908 | 3.47E-13 | transposed | |
Bda14g01027 | Bda-Chr14:8651581 | Bda15g00745 | Bda-Chr15:10917908 | 1.16E-30 | transposed | |
Bda15g00745 | Bda-Chr15:10917908 | Bda06g00660 | Bda-Chr6:9234513 | 9.68E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17208 | PF01486 | K-box | 4.60E-24 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda15g00745 | - | - | fve:101305891 | 241.121 |