Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00749 ATGCTTGAATCCCAGTTCACTGCTCTCAGGAACACTCTCTTACACTTGATTGATAAATGCAAGAACATGAAAGAGCTCAAACAAATTCATACCCAGATCATAACATCTCCCGTCATTCTTCAAAATGATCAATACTTCCTCATCTCTCGTCTCCTTTTCTTTTGCGCCCTTTCGGATTTGGGTTCGCTTCCTTATGCAAACGATGTTTTCCGATCGATTTCGTCGCCCAATCTCTATATTTTCAACATCATGATCAGAGCTTATGCTTCCCTTGGCGATTCTAACCCCGGAATTGATCAAAGTTGTTCTTTGAAGCTGTATAAGGAAATGCTAAGTTCTGGTATTAAGCCTGATTTCCTTACTTTTCCATTTATTATAAAAGAATGCACTAGGCAGGTTGATGTTAGAAATGGTAATAGTATTCACGCTCAATCTGTAAAGTTGGGGCGGTTTGATGATATTTTTGTTCAGAATTCGTTCATAGCGTTTTACCATGCGTGTAGATTTACAATTCACGCACAGAAGGTGTTTGATGAAATGTTAAACAGAGATATTGTTTCTTGGAACTCAATGGTTATAGGGTTATTGAGAAATGGGGAGCTTTATTACGCATTGGATTTATTTAAAAGTATGAAGGAGAAGAGTGTTATTAGTTGGAATTCGATTATAACCGGATTAGTTCAAGGAGGTTGGCCAAAGGAGGCCTTGGATCTTTTTCATGAAATGCTGATGACGAGTAATTGCATAGTTAGACCTGATAAGATTACAATTGCTAGTGTTCTTTCAGCTTGTTCTTATCTCGGAGCTATTCATCATGGAAAATGGGTGCATGAATATTTTTCCAAAAGCGGGTTGGAGTTTGACATGGTAATTGGAACAGCATTGGTTGATATGTATGGAAAATGTGGATTCGTAGATCAAGCATACGAAGTGTTCGAGAAAATGTCCAAAAAGGATACATTGGCATGGACTGCCATGATTTCAGGTTTGGCTCTCAACGGCAATGGGGAACGAGCTTTTGACCTTTTCAAAAAAATGGAGTCGAATGGAGTGAAGCCGAACCAAGTGACCTTTGTCGGACTATTATCAGCCTGTGCTCATTCCGGATTAGTAGAAAAAGGCCGATCGTGTTTTGAGATGATGATCCGTGATTACTCACTTGAACCTCAGGTCCATCATTATGCTTGCCTAGTTGACATACTTAGTAGAGCCGGTCTCTTGGAAGAGGCTGAAACGCTTATTAGAGGCATGCCTATGAAGCCCGATGTGTTTGTCTGGGGTGCTTTACTGGGGGGCTGTCAAATGCATGGAAATGTAGATTTAGGAGAAAAAGTTTCACGATATTTAATCAAACTGGAACCTCAAAACCATGCTTTTTATTTGGCCTTGTGTGACATATATTTAAAGGCCAACAGATTTGAAGATGTAAAGAGAGTAAGAGCCCTAATGGCAGAAAGAGGGATCAGAAAGGAAGTCCCAGGTGGTAGTATGATTGAAATTGATGGAAATGTTTATGAGTTCTCAGTTAAGGGATCACCCACAGTTGCTATGGAGGAATTAGAAATGATTACGAGTCGTTTACGGCTTTTAATGAAAAGAAACTGGGACACACTGTACTATGATGAGATATACTGA 1635 39.57 MLESQFTALRNTLLHLIDKCKNMKELKQIHTQIITSPVILQNDQYFLISRLLFFCALSDLGSLPYANDVFRSISSPNLYIFNIMIRAYASLGDSNPGIDQSCSLKLYKEMLSSGIKPDFLTFPFIIKECTRQVDVRNGNSIHAQSVKLGRFDDIFVQNSFIAFYHACRFTIHAQKVFDEMLNRDIVSWNSMVIGLLRNGELYYALDLFKSMKEKSVISWNSIITGLVQGGWPKEALDLFHEMLMTSNCIVRPDKITIASVLSACSYLGAIHHGKWVHEYFSKSGLEFDMVIGTALVDMYGKCGFVDQAYEVFEKMSKKDTLAWTAMISGLALNGNGERAFDLFKKMESNGVKPNQVTFVGLLSACAHSGLVEKGRSCFEMMIRDYSLEPQVHHYACLVDILSRAGLLEEAETLIRGMPMKPDVFVWGALLGGCQMHGNVDLGEKVSRYLIKLEPQNHAFYLALCDIYLKANRFEDVKRVRALMAERGIRKEVPGGSMIEIDGNVYEFSVKGSPTVAMEELEMITSRLRLLMKRNWDTLYYDEIY 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11034485 11036119 - Bda012606.1 Bda15g00749 22444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00749 544 Pfam PPR repeat family 318 366 IPR002885 -
Bda15g00749 544 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 534 - -
Bda15g00749 544 Pfam E motif 436 499 IPR046848 -
Bda15g00749 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 117 IPR002885 -
Bda15g00749 544 Gene3D Tetratricopeptide repeat domain 146 271 IPR011990 GO:0005515
Bda15g00749 544 Gene3D Tetratricopeptide repeat domain 272 372 IPR011990 GO:0005515
Bda15g00749 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Bda15g00749 544 Gene3D Tetratricopeptide repeat domain 65 145 IPR011990 GO:0005515
Bda15g00749 544 Pfam PPR repeat 186 215 IPR002885 -
Bda15g00749 544 Pfam PPR repeat 217 243 IPR002885 -
Bda15g00749 544 Pfam PPR repeat 394 418 IPR002885 -
Bda15g00749 544 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 534 - -
Bda15g00749 544 Gene3D Tetratricopeptide repeat domain 373 508 IPR011990 GO:0005515
Bda15g00749 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Bda15g00749 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Bda15g00749 544 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Bda15g00749 544 TIGRFAM PPR: pentatricopeptide repeat domain 322 354 IPR002885 -
Bda15g00749 544 TIGRFAM PPR: pentatricopeptide repeat domain 186 215 IPR002885 -
Bda15g00749 544 TIGRFAM PPR: pentatricopeptide repeat domain 293 319 IPR002885 -
Bda15g00749 544 TIGRFAM PPR: pentatricopeptide repeat domain 217 248 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00749 - - - qsu:111995901 702.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00535 Bda-Chr12:8477066 Bda15g00749 Bda-Chr15:11034485 9.95E-113 dispersed
Bda15g00749 Bda-Chr15:11034485 Bda10g00471 Bda-Chr10:37753180 1.63E-126 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g2 . Blo16g00315 . Bda15g00749 . . Bma06g00299 . . . Cma10g00005 . Car10g00003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00240 . Bma08g00287 . Cmo10g00003 . . . . . . Cpe18g00946 . . . . . . . . . . . . . . . . . .
Vvi17g5 . . . Bda15g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma13g00832 . . . . . . . . . . . . Cla03g00382 Cam03g0401 Cec03g0387 Cco03g0402 Clacu03g0400 Cmu03g1005 Cre03g0697 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018055 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00749 Bda_Chr15 FPKM 16.397306 20.285101 19.914345 23.966986 12.508529 7.786274 12.209671 25.571032 29.105576