Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00760 ATGGCGGAAAAAATGAGGTTATCCACATTATTACTCTCCTTTTTCTTCTTCTTTTCTCCATCATTTTCATTTGATTTTCCCAATGGGGCAGACTTGTGGTGCAAGAAAACCCCATACCCAGAAACCTGCAAATATTTCTTCAAGGATTACAAAAATGGCTTCAAACACAAATCTGAATTCAAAAAAATGGCAGTCCAAATTGCCCTGGAAAGAGCTTTAAGAGCTGAGAGCCATAATAAATGGCTAGGAGGAAAATGCAGAAACAAGAAAGAAAAAGCTGCATGGGCTGACTGCACAGAGCTCTACCAGAGCACCATTCTTCAACTCAACAAAACCATAGACCCTACGATCAAATGCACTGATTTAGATTCGCTGACTTGGCTCAGCTCGGCCCTGACGAATCTCGAAACTTGTCGGGCTGGATTCGTCGATCTAAACGTGGCTGACTATCTGTTACCACTCATGTGGAACAACGTGTCGAAGCTAATCAGCAACACTTTAGCCATCGACGGAGGTAACTTATCGGACCAAATTCCGGGGCAAAATGAAGTTTATGAGGATGGTTTTCCGAATTGGGTCTCCGGCGGAGATAGGAAGCTCTTGCAGTCGTCGTCTCCGAAGGCTGACATTGTGGTGGCACAGGACGGGTCTGGAAACTACCGGACTGTGACGGAGGCTGTGGCGGCCGCCGGGAAGAGGAGCGGAAGTGGGAGGTTTGTGATATACGTGAAGAAGGGGGTTTACAAGGAAAATATAGTGTTGGGGACTAAGTTAAAGAATATAATGATGATCGGAGATGGAATGAGATATACCATTATTACTGGTAGTAAAAGTGTCGGCGGTGGCTCTACGACTTTCAATTCAGCGACTTTCGCCGTGACAGGAGACGAGTTTATTGCTCGTGGTATCACATTCCGTAACACAGCCGGCGCAGAAAATCACCAGGCCGTGGCTTTCCGATCAGGTGCTGATCTATCTGTTTTCTTCCGATGCGGTTTCGAGGGATACCAAGACACCCTCTACGTACACTCCCAGCGACAATTTTATCGAGAATGCTACATCTACGGTACTGTCGATTTCATCTTTGGCAACGCTGCAGTCGTTTTCCAAAATTGCATGATCTTACCCAGAAAACCAATACCCGGGCAACAAATCGCAGTCACGGCCCAGGGTCGGACCGACCCCAATCAAAACACAGGAATCTCGATCCAAAATTGTCGTGTCTCGCCCGCGTCAGATCTTGTACCCGTCCAAACCACAGTGAGAACGTACCTCGGAAGGCCATGGCAAGAGTATTCACGTACGGTTTTCATGCAGACGTTTCTCGATAAATTCATAAACCCAGCAGGGTGGTTGGAATGGAGCGGAAATTTCGCGTTGGATACTTTATATTACGGGGAATACAAGAATTTCGGACCTGGTTCGGCGACAAACCAGAGAGTGAAATGGAAGGGTTATCGAGTTATAACGAGTGCAACAGAGGCTTCAAAATTTACAGTACAGAACTTTATTGCCGGTAGTTCGTGGCTACCCGGAACCGGAGTTTCATTCACCGCCGGACTATGA 1566 46.81 MAEKMRLSTLLLSFFFFFSPSFSFDFPNGADLWCKKTPYPETCKYFFKDYKNGFKHKSEFKKMAVQIALERALRAESHNKWLGGKCRNKKEKAAWADCTELYQSTILQLNKTIDPTIKCTDLDSLTWLSSALTNLETCRAGFVDLNVADYLLPLMWNNVSKLISNTLAIDGGNLSDQIPGQNEVYEDGFPNWVSGGDRKLLQSSSPKADIVVAQDGSGNYRTVTEAVAAAGKRSGSGRFVIYVKKGVYKENIVLGTKLKNIMMIGDGMRYTIITGSKSVGGGSTTFNSATFAVTGDEFIARGITFRNTAGAENHQAVAFRSGADLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVFQNCMILPRKPIPGQQIAVTAQGRTDPNQNTGISIQNCRVSPASDLVPVQTTVRTYLGRPWQEYSRTVFMQTFLDKFINPAGWLEWSGNFALDTLYYGEYKNFGPGSATNQRVKWKGYRVITSATEASKFTVQNFIAGSSWLPGTGVSFTAGL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11202090 11204050 + Bda012619.1 Bda15g00760 22455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00760 521 Pfam Pectinesterase 209 506 IPR000070 GO:0030599|GO:0042545
Bda15g00760 521 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 169 IPR006501 GO:0004857
Bda15g00760 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 170 IPR035513 -
Bda15g00760 521 SMART PMEI_2 25 169 IPR006501 GO:0004857
Bda15g00760 521 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Bda15g00760 521 Pfam Plant invertase/pectin methylesterase inhibitor 33 169 IPR006501 GO:0004857
Bda15g00760 521 CDD PMEI-like_3 32 169 - -
Bda15g00760 521 PANTHER PECTINESTERASE 9 520 - -
Bda15g00760 521 PANTHER PECTINESTERASE 9 520 - -
Bda15g00760 521 SUPERFAMILY Pectin lyase-like 204 520 IPR011050 -
Bda15g00760 521 Gene3D - 203 521 IPR012334 -
Bda15g00760 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 169 IPR035513 -
Bda15g00760 521 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00123 Bda15g00760 CCT
Bda07g01931 Bda15g00760 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00007 Bda-Chr5:516989 Bda15g00760 Bda-Chr15:11202090 2.36E-148 dispersed
Bda10g01177 Bda-Chr10:45743637 Bda15g00760 Bda-Chr15:11202090 0 dispersed
Bda12g01098 Bda-Chr12:42724439 Bda15g00760 Bda-Chr15:11202090 1.05E-147 dispersed
Bda13g00493 Bda-Chr13:5820585 Bda15g00760 Bda-Chr15:11202090 0 dispersed
Bda13g00495 Bda-Chr13:5829495 Bda15g00760 Bda-Chr15:11202090 1.37E-139 dispersed
Bda14g01633 Bda-Chr14:41840049 Bda15g00760 Bda-Chr15:11202090 2.65E-74 dispersed
Bda15g00760 Bda-Chr15:11202090 Bda12g01041 Bda-Chr12:42213162 4.86E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00760 K01051 - nnu:104598592 736.873