Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00769 ATGATAAGAAGCTATATAAACAATGACTTTCATCACGAGGCCATTCTTGTTTACCAAACTATGTCAAAATTTGGTTGCAGTCCCGATCATTATACGTATCCATGTGTATTGAAGGCATGTTCTGCGACTTATAGTTTAAGGCTTGGTTTGCAAATTCATTGTACTGTCCTAGAAATTGGACTTGACTCTAATCTGTTTATTGGAAATGGTTTGATATCCATGTATGGCAAATGTGGTTGTTTAGATGAGGCCCGGAAGATGCTCGATGAAATGCCGAGTAGAGATGTTGTTTCGTGGAACTCAATGGTTGCAGGATACGCACAAAACAAACGCTTTGACGATGCATTTCAAATCTCCAGAGAAATGGAGTCTTTGAACTTAAAGCCCGACAATGGAACAATGGCCAGCCTCTTGCCTGCAGTCAATAACACTTCATCCGACCATATTTCCTATGTTCATGAAATGTTTATGAAGTTGGGTAAAAAGAGTTTAGTTTCATGGAATGTGATGATTGCAATATATGTTAATAATTCAATGCCTGCTCAAGCTGTTGATCTATTCGAACAAATGGAAGCTTGTAATGTCCAACCAGATGCAATTACAATTGCAAGTATTCTTCCGGCTTGTGGAGATCTTTCCGCTATGTTGCTTGGAAGGCGACTTCATGAATGTATTGAAAGGAAAAAACTTAGGCCAAACTTATTGTTGGAAAATGCATTAATTGATATGTATGCTAAGTGTGGATGCTTACAAGCTGCAAGAGAGGTGTTTGAAAAAATGAGGTTACGAGACGTAGTTTCATGGACTTCAATGATCTCTGCGCATGGAAGATGTGGTGAAGGCAGAGCTGCAATAGCTCTCTTTGTAGCAATGCAAGAATCAGGGCTGAGCCCAGATTCAATTGCCTTTGTTTCTGTTCTCTCGGCCTGTAGCCATGCGGGATTAGTAGATGAAGGTCGATATTTCTTTCGCATGATGTACTGA 984 39.84 MIRSYINNDFHHEAILVYQTMSKFGCSPDHYTYPCVLKACSATYSLRLGLQIHCTVLEIGLDSNLFIGNGLISMYGKCGCLDEARKMLDEMPSRDVVSWNSMVAGYAQNKRFDDAFQISREMESLNLKPDNGTMASLLPAVNNTSSDHISYVHEMFMKLGKKSLVSWNVMIAIYVNNSMPAQAVDLFEQMEACNVQPDAITIASILPACGDLSAMLLGRRLHECIERKKLRPNLLLENALIDMYAKCGCLQAAREVFEKMRLRDVVSWTSMISAHGRCGEGRAAIALFVAMQESGLSPDSIAFVSVLSACSHAGLVDEGRYFFRMMY 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11510783 11511766 - Bda012628.1 Bda15g00769 22464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00769 327 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 94 IPR002885 -
Bda15g00769 327 Gene3D Tetratricopeptide repeat domain 1 165 IPR011990 GO:0005515
Bda15g00769 327 Gene3D Tetratricopeptide repeat domain 166 327 IPR011990 GO:0005515
Bda15g00769 327 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Bda15g00769 327 TIGRFAM PPR: pentatricopeptide repeat domain 97 130 IPR002885 -
Bda15g00769 327 TIGRFAM PPR: pentatricopeptide repeat domain 165 199 IPR002885 -
Bda15g00769 327 TIGRFAM PPR: pentatricopeptide repeat domain 238 266 IPR002885 -
Bda15g00769 327 TIGRFAM PPR: pentatricopeptide repeat domain 69 97 IPR002885 -
Bda15g00769 327 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Bda15g00769 327 TIGRFAM PPR: pentatricopeptide repeat domain 1 29 IPR002885 -
Bda15g00769 327 PANTHER OS03G0241800 PROTEIN 1 326 - -
Bda15g00769 327 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Bda15g00769 327 PANTHER OS07G0578800 PROTEIN-RELATED 1 326 IPR045215 GO:0003723|GO:0009451
Bda15g00769 327 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Bda15g00769 327 Pfam PPR repeat family 94 139 IPR002885 -
Bda15g00769 327 Pfam PPR repeat family 163 209 IPR002885 -
Bda15g00769 327 Pfam PPR repeat family 263 311 IPR002885 -
Bda15g00769 327 Pfam PPR repeat 1 26 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00769 - - - pvy:116106859 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00769 Bda-Chr15:11510783 Bda13g00444 Bda-Chr13:5398246 9.40E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda15g00769 . Bpe12g00362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011603 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 0 0 1 1 1 1 0 0 1 0 0 0 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00769 Bda_Chr15 FPKM 1.072202 0.0 30.687262 25.071222 19.292847 12.983327 23.435291 7.125235 6.55159