Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00777 ATGCCTCTTAGAACTGTTGTCTCGTGGAATTCAATGATTTCTGGGTATTCCAAATGGGGAAAATATAAAGAAGCTCTCAGTCTTCTTTCTACGATGAATCAAAGCAATGTAAAACCCAATGAGACCACTTTCTCTACTGTATTCAGTGTTTGCTCCCATTCAAAGTCGTTAGGTGAGGGAAAACAACTTCACTGTTTAGTTTTGAAATCTGGTTCAGCTAAATTTGACCTCGTGGGTTGTTCATTACTGTATCTATATTCTAGTTCTTTTAAAATTAAAAGCGCTGAGCGGGTGTTTGAAGAGTTGTATGAGGAAAATGTGTTGCTTTGGAGTTTGATGCTTGTGGGGTATGTGCAATGTAATTTGATGGCTGAGGGTTTCGATCTTTTCATGAAAATTCCTAACAGGGATGTCGTCGTATGGACCTCTTTGATTTCTGGATATGCTAGGAGCGACCATGAGAGAGAAAGGGCGTTAGAGTTGTTCTGGCGGATGAGACAGAGTGGTGAGGCTTTACCCAATGAGTTTACCTTTGATTGTGTTTTAAGGGTGTGTGGGAAACTTGGAATTTTAAATGAAGGAAAGCTTGTTCATGGGCTTCTGATTAAATTTGGGTTTGAGTTTGATAAATCAATTGGAGGCTCTTTGATTGAATTTTATTCTGAATGTGAAGCTCTTGATGATGCTCAGAAAGTATGTAAGGGTATGGGAAAGTGCTTATGTTTGAATGCTTTAAATTCTTTTCTCAAGGGGCTCATACTAGTGGGTAGGATTGGTGATGCAAAAGAGGTTTTTGAAAGATCAAATGAAAAAGATTCACGTTCTTATAATATTATGATTAAAGGGTACGCAACGAATGGTCAGGTTGAAGAATCAATTAGATTGTTCGAAAGAATGACGAATAAAACTATCATTTCCTTTAATACTATGATCTCTGTTTATTCCAGGAATTGTGAACTTGATAAAGCCGTGAAACTTTTCAAAGAAACTAAAGGAGAAGGAAATACCATAACATGGAATTCAATGATGTCCGGCTATGTTCAAAGCAATGAACATGAAGAAGCATTCAAACTATATGTCACGATGTGTAGATTGAAAATAGGCAGTTCCAGATCGACATTTTCTGCTCTACTTCATGCTTGTACATGTCTAGGGTCACTTCAACTTGGTCAATTACTTCATGGCCGAGTCGTGAAAACTCCATTTGAATCCAGTGTTTATGTTGGAACTTCTCTGATAGATATGTACTCAAAATGTGGAAGCATATCTGATGCTCAAAAATGTTTCGCTGGTGTCTGTTATCCAAATGTCGCAGCTTGTACGGCTCTTATTAATGCGTATGTACATCATGGGCTTGGTACCAAGGCATTTTCACTCTTTGAAAATATGATTTCACAAGGAATAGTTCCAAATGCAGCAACTATTTTAGGAATTCTTTCTGCTTGTGGCCGTGTTGGTTTAATAAACGAAGGGTTGAAGATTTTTAATGCAATGGAGAATAATTATGGTGTAGTTCCAACATATGAACACTATGCCTGTGTAGTTGATCTTCTTGGTAGATCAGGCTACTTGCGAGAAGCTGAAGATTTTATAAAAAATATGCCAATTGAAGCAGATTGTGTTATCTGGGGAGCTTTGCTCAATGCTTGTTGGTTTTGGATGGACATGGAACTGGGAGAGAGGGTGGCTGCAAAGATGTTAGCTAAAAACCCCATTCCAATATCAGCTTATGTCATCATGTCCAACATTTATGCTGTGTTAGGAAAATGGGTGGAGAAGATTAATGTAAGGAATACTTTAAAAAGCTTGGAAGTGAAAAAGAGTCGAGGTTGTAGTTGGCTTGAACTGAATAGTGGAATTTATGTGTTCTCTGTCGAAGATAGAGGACATCCTTGTTACAATCTGATATATGAAACTCTGGATCATCTAACCACGAATAGCAATTATATTACTCGCTGTGAATTTTTTTCCTGA 1974 37.64 MPLRTVVSWNSMISGYSKWGKYKEALSLLSTMNQSNVKPNETTFSTVFSVCSHSKSLGEGKQLHCLVLKSGSAKFDLVGCSLLYLYSSSFKIKSAERVFEELYEENVLLWSLMLVGYVQCNLMAEGFDLFMKIPNRDVVVWTSLISGYARSDHERERALELFWRMRQSGEALPNEFTFDCVLRVCGKLGILNEGKLVHGLLIKFGFEFDKSIGGSLIEFYSECEALDDAQKVCKGMGKCLCLNALNSFLKGLILVGRIGDAKEVFERSNEKDSRSYNIMIKGYATNGQVEESIRLFERMTNKTIISFNTMISVYSRNCELDKAVKLFKETKGEGNTITWNSMMSGYVQSNEHEEAFKLYVTMCRLKIGSSRSTFSALLHACTCLGSLQLGQLLHGRVVKTPFESSVYVGTSLIDMYSKCGSISDAQKCFAGVCYPNVAACTALINAYVHHGLGTKAFSLFENMISQGIVPNAATILGILSACGRVGLINEGLKIFNAMENNYGVVPTYEHYACVVDLLGRSGYLREAEDFIKNMPIEADCVIWGALLNACWFWMDMELGERVAAKMLAKNPIPISAYVIMSNIYAVLGKWVEKINVRNTLKSLEVKKSRGCSWLELNSGIYVFSVEDRGHPCYNLIYETLDHLTTNSNYITRCEFFS 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11610833 11612806 - Bda012634.1 Bda15g00777 22472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00777 657 PANTHER BNACNNG15330D PROTEIN 1 132 - -
Bda15g00777 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 172 IPR002885 -
Bda15g00777 657 Pfam PPR repeat family 335 381 IPR002885 -
Bda15g00777 657 Pfam PPR repeat family 5 51 IPR002885 -
Bda15g00777 657 Pfam PPR repeat family 435 482 IPR002885 -
Bda15g00777 657 Gene3D Tetratricopeptide repeat domain 410 620 IPR011990 GO:0005515
Bda15g00777 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Bda15g00777 657 PANTHER - 256 304 - -
Bda15g00777 657 PANTHER - 1 132 - -
Bda15g00777 657 Pfam E motif 555 615 IPR046848 -
Bda15g00777 657 Gene3D Tetratricopeptide repeat domain 1 72 IPR011990 GO:0005515
Bda15g00777 657 Gene3D Tetratricopeptide repeat domain 303 388 IPR011990 GO:0005515
Bda15g00777 657 Gene3D Tetratricopeptide repeat domain 73 193 IPR011990 GO:0005515
Bda15g00777 657 Gene3D Tetratricopeptide repeat domain 195 302 IPR011990 GO:0005515
Bda15g00777 657 Pfam PPR repeat 410 429 IPR002885 -
Bda15g00777 657 Pfam PPR repeat 275 302 IPR002885 -
Bda15g00777 657 Pfam PPR repeat 305 334 IPR002885 -
Bda15g00777 657 Pfam PPR repeat 110 136 IPR002885 -
Bda15g00777 657 PANTHER - 117 238 - -
Bda15g00777 657 PANTHER - 387 645 - -
Bda15g00777 657 PANTHER - 308 445 - -
Bda15g00777 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Bda15g00777 657 TIGRFAM PPR: pentatricopeptide repeat domain 305 331 IPR002885 -
Bda15g00777 657 TIGRFAM PPR: pentatricopeptide repeat domain 337 367 IPR002885 -
Bda15g00777 657 TIGRFAM PPR: pentatricopeptide repeat domain 7 41 IPR002885 -
Bda15g00777 657 TIGRFAM PPR: pentatricopeptide repeat domain 275 300 IPR002885 -
Bda15g00777 657 TIGRFAM PPR: pentatricopeptide repeat domain 439 472 IPR002885 -
Bda15g00777 657 Pfam Pentatricopeptide repeat domain 137 187 IPR002885 -
Bda15g00777 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Bda15g00777 657 PANTHER BNACNNG15330D PROTEIN 308 445 - -
Bda15g00777 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Bda15g00777 657 PANTHER BNACNNG15330D PROTEIN 117 238 - -
Bda15g00777 657 PANTHER BNACNNG15330D PROTEIN 387 645 - -
Bda15g00777 657 PANTHER BNACNNG15330D PROTEIN 256 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00777 - - - qlo:115983567 870.152
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00777 Bda-Chr15:11610833 Bda03g01751 Bda-Chr3:56879665 1.38E-07 dispersed
Bda15g00777 Bda-Chr15:11610833 Bda03g01668 Bda-Chr3:55953571 3.28E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00777 Bda_Chr15 FPKM 0.0 0.0 0.0 0.0 0.310669 0.0 0.0 0.0 0.0