Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00786 ATGGATTCTCTGCATGTTGCTTCTGTTCTTTCATGCCCACCATTCTTTAATACTAAACTATCAAGAACTTGCCTTACTTCTGGAGTGATCACTCGCCTCTTTCAAATTCCTCTAGGCAGGAAGACTCGTTCAATCGGTCGTTTAAGGCTTACTGCTTCGATTTCGGGTGGAAGGGCATGTGATGTTGGTGGGTATTCGGATGGGTCTTATGACACTGAAGAAAATAACAAGGAAAAAATGGGTTTCATCATCGATTCTGAGAGAGATGCTTCTGGCTCTGTGGTTGGGTTTAATTTGATTTCTAAACCTGGTGGAAATAATGAAGAAGTTGTCTTAAATAAAGACTTGAAAGCTGATACAGGTGAAGATCAGGAGAAAAAGGAAGAAAAGCCCCAGATTAAAGTAACTTACAATGTTATCTTTGTAACCTCTGAAGCATCACCATACTCAAAGACGGGAGGCTTGGGAGATGTTTGTGGTTCCTTGCCAATAGCTTTAGCTGCCCGTGGACACAGAGTGATGGTAGTTTGTCCTAAATACCTCCATGGCACTCCCGCTGACAAAAAATTTGCCAGGGCTGTCGATTTGGATACTCGCATCAAGTTATATTGCTTTGGAGGACAGCAAGAAGTAGCTTTCTTTCATGAATACAGAGAGGGTGTTGACTGGGTATTTGTGGATCACCCTTCATACCAAAGACCTGGAAATCCATATGGGGACGTGTATGGTGCATTTGGCGACAATCAGTTTCGGTTCACTTTACTTTGCCATGCTGCATGTGAAGCTCCTCTAGTGCTTCCTTTGGGTGGATTCACCTATGGGGAGAAATGTCTTTTCCTTGTCAATGACTGGCATGCAGGACTTGTGCCATTACTTTTGGCAGCCAAGTATAGGCCACATGGAATTTATAGGGATGCCAGAAGCATCCTCGTCATCCACAATCTTGCTCATCAGGGCGTTGAACCTGCAGTAACATACAAGAATATCGGACTCCCTCTAGAGTGGTATGGAGCCCTGGAATGGGTATTCCCAACCTGGGCAAGAACACATGCTCTCGACACTGGCAAAGCCGTCAATATTTTAAAGGGTGCGGTTGTGACATCTGATCGCATTTTGACAGTTAGCAAGGGTTATTCTTGGGAAATTACGACAGCAGAAGGTGGATATGGCTTACAAGATTTATTAAGCAGTCGAAAGAGTGTTCTTGATGGGGTTACAAATGGAATCGATGTTTTTGAATGGAATCCATCTTCAGATGTACATATTCCCTCCCATTATTCTCTTGAGGATCTTTCTGGAAAGGTAGGTTAA 1311 43.4 MDSLHVASVLSCPPFFNTKLSRTCLTSGVITRLFQIPLGRKTRSIGRLRLTASISGGRACDVGGYSDGSYDTEENNKEKMGFIIDSERDASGSVVGFNLISKPGGNNEEVVLNKDLKADTGEDQEKKEEKPQIKVTYNVIFVTSEASPYSKTGGLGDVCGSLPIALAARGHRVMVVCPKYLHGTPADKKFARAVDLDTRIKLYCFGGQQEVAFFHEYREGVDWVFVDHPSYQRPGNPYGDVYGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHAGLVPLLLAAKYRPHGIYRDARSILVIHNLAHQGVEPAVTYKNIGLPLEWYGALEWVFPTWARTHALDTGKAVNILKGAVVTSDRILTVSKGYSWEITTAEGGYGLQDLLSSRKSVLDGVTNGIDVFEWNPSSDVHIPSHYSLEDLSGKVG 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11757338 11760284 + Bda012647.1 Bda15g00786 22481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00786 436 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 128 431 - -
Bda15g00786 436 Gene3D Glycogen Phosphorylase B; 129 427 - -
Bda15g00786 436 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 72 435 - -
Bda15g00786 436 Pfam Starch synthase catalytic domain 138 396 IPR013534 -
Bda15g00786 436 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 72 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00786 K00703 glgA; starch synthase [EC:2.4.1.21] - tcc:18605779 605.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00750 Bda-Chr8:9350650 Bda15g00786 Bda-Chr15:11757338 1.12E-57 dispersed
Bda10g00032 Bda-Chr10:698125 Bda15g00786 Bda-Chr15:11757338 8.40E-10 dispersed
Bda13g01693 Bda-Chr13:40301216 Bda15g00786 Bda-Chr15:11757338 7.16E-68 dispersed
Bda15g00786 Bda-Chr15:11757338 Bda06g01089 Bda-Chr6:38847849 3.17E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1036 Blo06g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0986 Cone5ag0692 . . . . . . . . . Bda15g00786 . Bpe12g00350 Bma08g00388 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016620 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00786 Bda_Chr15 FPKM 7.589989 7.606345 14.221077 13.672541 12.321946 11.889289 13.56508 53.781212 57.057274