Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00790 ATGAAAATGGCGTTCAGACGCAGAACCCAGGCACCTAAGCCTCACCCTCGCTGTCGTTCTGATGAATACGCCAACGTTTTGTGTGAGGTCTGTGGTTCTGGTGAGAGTCCTGGTGAGCTTCTTCTTTGCGACAAATGCGACGGAGGATACCACCTCTTTTGTCTCAGACCCATCCTCGTTGCTGTTCCTAAAGGCTCTTGGTTTTGTCCCTCCTGCTCCAACAACAAGCAGCTCTTTCATTTCCCACTCATTCAAACCAAAATTGTTGATTTCTTCCGCATCCAAAGGCATGCATGTTCCATCAACATAGCAAAGGGAGATAGCAAAAAGAAGCGGAGACGTACAAGCAGCTTAGTACTAGCGAAAAAGAAACGGAAACTTCTTGCATTTAACCCAAGTGAGGATCCAACCAGAAGGCTAGAACAAATGGCATCACTGGCCTCAGCGTTGATGGCTACCAAAACGGAGTTTATTAACGAGCTTACTTACATTCCTGGCATGGCACGGAAGTCAGCTAATTGTGCGAATTTGGAGCGAGAAGGAATGCAGGTACTCTCAAAAGAGGACACTGAAACATTCGAGCTGTGCAGAAGAATGATGGAGAGAGGGGAATGGCCTCCCCTTATGGTTGTTTTTGATCCTCAAGAAGGGTTAGCATTTGCAGTTTTCGATATTTTCGCCCTCAAAACTTATTACTGA 699 46.21 MKMAFRRRTQAPKPHPRCRSDEYANVLCEVCGSGESPGELLLCDKCDGGYHLFCLRPILVAVPKGSWFCPSCSNNKQLFHFPLIQTKIVDFFRIQRHACSINIAKGDSKKKRRRTSSLVLAKKKRKLLAFNPSEDPTRRLEQMASLASALMATKTEFINELTYIPGMARKSANCANLEREGMQVLSKEDTETFELCRRMMERGEWPPLMVVFDPQEGLAFAVFDIFALKTYY 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11801960 11803499 - Bda012651.1 Bda15g00790 22485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00790 232 Gene3D SET domain 112 229 IPR046341 -
Bda15g00790 232 ProSiteProfiles Zinc finger PHD-type profile. 25 75 IPR019787 -
Bda15g00790 232 ProSitePatterns Zinc finger PHD-type signature. 28 72 IPR019786 -
Bda15g00790 232 SMART PHD_3 27 73 IPR001965 -
Bda15g00790 232 SUPERFAMILY FYVE/PHD zinc finger 21 77 IPR011011 -
Bda15g00790 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 77 IPR013083 -
Bda15g00790 232 CDD PHD_RSF1 27 72 - -
Bda15g00790 232 Pfam PHD-finger 28 74 IPR019787 -
Bda15g00790 232 PANTHER HISTONE ACETYLTRANSFERASE 3 218 - -
Bda15g00790 232 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00790 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - jre:108994017 297.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01267 Bda-Chr1:48107151 Bda15g00790 Bda-Chr15:11801960 2.29E-11 dispersed
Bda05g00055 Bda-Chr5:3274807 Bda15g00790 Bda-Chr15:11801960 9.87E-07 dispersed
Bda05g00899 Bda-Chr5:57401164 Bda15g00790 Bda-Chr15:11801960 5.75E-07 dispersed
Bda11g01739 Bda-Chr11:52043782 Bda15g00790 Bda-Chr15:11801960 5.55E-08 dispersed
Bda14g01056 Bda-Chr14:9017007 Bda15g00790 Bda-Chr15:11801960 4.12E-65 dispersed
Bda15g00790 Bda-Chr15:11801960 Bda02g00862 Bda-Chr2:49060245 7.98E-09 dispersed
Bda15g00790 Bda-Chr15:11801960 Bda11g01758 Bda-Chr11:52440313 1.44E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17211 PF00628 PHD 1.50E-12 CL0390 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00790 Bda_Chr15 FPKM 3.089936 1.401246 4.288244 6.414531 7.393659 7.157395 7.458694 5.401578 4.460155