Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00798 TTAATTTCCTTATTTCGTGGTACTGGAATTGGCGAACAAGAGGCTCACCTACTTTTGGCAAAGAACCCAACCATTGCTTACTCCCATTTAGACACGATACGTTCTCGCATGCTTTCGTTGCAGTTGGTTGGCATCCAAGGCCTTGATCTCGCTCACTTAATTCTGAAATGCCCAAATATATTGACAGCAGCTGAAACGGATTCATTGTTATGTTTCTTGCGTAATGAGTTGGAGGCAGAGATTGAGCCCGCACAGCTCTCACGTCTTTTGACTGCCGTAGAACCGAGATTCTTGGTGGGGTTTGATGTAAAGGTTAGACTAGTTCTTGACCTTGGAATTCCCCGTGAAAGAATTGCTCACGTCCTCAATAATGTCAACTTATCGAAGGCGTTGTGCATGAAGTCAGTGGAAGAAATAGACAAGACTTTTAAATTCTTGCACCCCTTTGGTGGCGTTGATCTGATAGTAAGGCGTCCTCAGATTCTCAACTATGATTTCAATACTCAGTTGGCTCCAAGAATTGATTACTTATTGAAGCTTAGCGGGGGAGATGAGTTCGCCACCAGAAATGTGTTGCGGAAACTGCCTGCTATATTGAGTTATAGCGTGCAGCATGTTGGCAGCCACGTTATGTTTTTGAGGTCTTTTGCTGGGCTGAGCGACCGAGAAATATTCAAGATTATCCTCGGGTACCCTACTGTGATTAGTGCTAGCAGGGAGAGGAAATTGCGTCCTCGGATAGAGTTTCTCAAACAATGCGGACTGAATTCAGGAGAAGTTTTCAAGTTCTTGATCAAAGCTCCCTTGTTCCTAGGCCTCTCATTTGAAAACAACATTGCTTATAAACTTGTATTTTTGGTGAAGATAGGATACGTGCATAGAACCAAGGAGTTGGCAGTGGCTATGGGATCTTTGACAAGAACAAGCTGTGAAAATTTGCAGAAAGTGGTGGGGCTATACCTAAGCTATGGGTTCTCTTATGCTGACATCTTAGCCATGAGCCAAAAACACCCTCAGATACTTCAATACAATCATAGCTCATTGAAAGAGAAGATCGAGTACTTGACCGAGGAAATGGGCCGGGATATCAGAGAGTTGCTGTCTTTTCCTGCATTTCTGGGTTACAAGCTTGACGACAGAATTAAGATTAGGTACGAAGAGAAGACGAAAACGACCGGGGAAAGAATGTCCCTCAATAAGCTCTTGACGGTATCTCATGAACGATTCTTAACCAAGAAAGAGAAGAAAACCAGTGCATCTACTGCATGA 1269 43.5 LISLFRGTGIGEQEAHLLLAKNPTIAYSHLDTIRSRMLSLQLVGIQGLDLAHLILKCPNILTAAETDSLLCFLRNELEAEIEPAQLSRLLTAVEPRFLVGFDVKVRLVLDLGIPRERIAHVLNNVNLSKALCMKSVEEIDKTFKFLHPFGGVDLIVRRPQILNYDFNTQLAPRIDYLLKLSGGDEFATRNVLRKLPAILSYSVQHVGSHVMFLRSFAGLSDREIFKIILGYPTVISASRERKLRPRIEFLKQCGLNSGEVFKFLIKAPLFLGLSFENNIAYKLVFLVKIGYVHRTKELAVAMGSLTRTSCENLQKVVGLYLSYGFSYADILAMSQKHPQILQYNHSSLKEKIEYLTEEMGRDIRELLSFPAFLGYKLDDRIKIRYEEKTKTTGERMSLNKLLTVSHERFLTKKEKKTSASTA 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11856134 11857402 + Bda012658.1 Bda15g00798 22493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00798 422 Gene3D Transcription termination factor 3, mitochondrial 206 419 IPR038538 -
Bda15g00798 422 Gene3D Transcription termination factor 3, mitochondrial 1 147 IPR038538 -
Bda15g00798 422 PANTHER CGI-12 PROTEIN-RELATED 8 417 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 Pfam mTERF 2 252 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 Pfam mTERF 243 410 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF8, CHLOROPLASTIC 8 417 - -
Bda15g00798 422 SMART mt_12 16 46 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 SMART mt_12 363 395 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 SMART mt_12 51 80 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 SMART mt_12 152 183 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 SMART mt_12 225 256 IPR003690 GO:0003690|GO:0006355
Bda15g00798 422 SMART mt_12 189 220 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00798 - - - zju:107414938 557.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00618 Bda-Chr10:40190907 Bda15g00798 Bda-Chr15:11856134 4.01E-07 dispersed
Bda13g00176 Bda-Chr13:2234372 Bda15g00798 Bda-Chr15:11856134 2.70E-11 dispersed
Bda14g00552 Bda-Chr14:4049291 Bda15g00798 Bda-Chr15:11856134 5.51E-15 dispersed
Bda15g00798 Bda-Chr15:11856134 Bda09g00423 Bda-Chr9:5414372 8.47E-06 dispersed
Bda15g00798 Bda-Chr15:11856134 Bda13g01650 Bda-Chr13:39959524 6.39E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g966 . . . . . . . . Cmo16g00021 . . . . . . . Cpe14g00017 . . . . . . . . . . . . . . . . . . . . . . . . . Bda15g00798 . . . . . . . . . Car16g00018 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019283 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17212 PF02536 mTERF 5.20E-20 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00798 Bda_Chr15 FPKM 11.277244 8.733479 8.332525 7.144843 2.472063 2.835339 1.588604 15.157481 15.374954