Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00799 ATGTATCCTGGTGGTTACACTGCTGAAGTCACAAGCTTACCGCCTCATGTGACGGAGAAGGATGTTTATGAGTTTTTTTCTCACTGTGGTATAGTCGAGCACATTGAAATCATCAGATCTGGCGATTATGCATGTTCTGCATACGTGACCTTCAAGGATGCATTTGGTTTAGAAACTGCAGAGCTACTTAGTGGAGCTATGATCTTAGATGAACGAGTACATATAGCACGATGGGGAATGTACGTAGCAGAGTCTGATCCTTGGAATGATCCATCGTGGAAAATTGAAGATAATACAAGATCAATGCAGGGGTGTGACACAATGCAATTTGTTTACACACCTGGAGAAGCAGTGTACAAGGCTCAAGAAGTAGTGAAGACAATGCTAGCTAGTGGGTTTATTTTAGCAAAAGATGCTCTAAGCAAGGCAAAAGCATTGGACGAGTCCCACCAGGTCTCAGCTTGTGCGTCAGCCAAGGTCACCGAGTTTAGCAATCAAATCGGGCTCACAGACACAATTCATGCCGGAATGGAAACTGTCCGGTATGTGGACGAGACATTTCATGTCTCTGGTATCACCAAGTCAGCTGCCACTGTCACCGGAACGGCAGCCGTGGTTGCTCTAACTGTGACCGGCAAAGCAGTTGTGGCAGCTGGAAATGCTGTTGCTAGCAGCAACTACTTTGCAAAGGGTGCTCTCTGGGTCTCAGATTTACTGTCACGGGCTTCAAAAGCTGCGGCAGATTTAGGCAAACACGGGAGCAAGTGA 768 46.61 MYPGGYTAEVTSLPPHVTEKDVYEFFSHCGIVEHIEIIRSGDYACSAYVTFKDAFGLETAELLSGAMILDERVHIARWGMYVAESDPWNDPSWKIEDNTRSMQGCDTMQFVYTPGEAVYKAQEVVKTMLASGFILAKDALSKAKALDESHQVSACASAKVTEFSNQIGLTDTIHAGMETVRYVDETFHVSGITKSAATVTGTAAVVALTVTGKAVVAAGNAVASSNYFAKGALWVSDLLSRASKAAADLGKHGSK 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11866943 11876858 - Bda012659.1 Bda15g00799 22494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00799 255 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 255 - -
Bda15g00799 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 75 IPR000504 GO:0003723
Bda15g00799 255 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 255 - -
Bda15g00799 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 60 IPR000504 GO:0003723
Bda15g00799 255 SUPERFAMILY RNA-binding domain, RBD 7 76 IPR035979 GO:0003676
Bda15g00799 255 Gene3D - 6 76 IPR012677 -
Bda15g00799 255 SMART rrm1_1 7 76 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00799 - - - mcha:111006739 310.071
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01461 Bda-Chr7:27172193 Bda15g00799 Bda-Chr15:11866943 1.21E-87 dispersed
Bda11g00706 Bda-Chr11:7018501 Bda15g00799 Bda-Chr15:11866943 3.36E-31 dispersed
Bda15g00799 Bda-Chr15:11866943 Bda09g00754 Bda-Chr9:13345566 9.04E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00799 Bda_Chr15 FPKM 0.0 0.0 0.0 0.289341 2.319225 1.375424 2.009912 0.70202 1.731177