Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00806 ATGGGTGACCCTGGATCTTACGGCTTAAGCCCTCGCTTGGATATTCAACAATTGTTGTTGGAAGCAAAACATCGATGGTTACGACCTGCTGAAATTTGTGAAATTCTCCGTAATTATCAGATGTTTCGTATTGAATCAGAGCCTCCACACCGACCACCAAGTGGTTCACTATTTCTTTTCGATCGAAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGGAAGAAGAAAGATGGCAAGACTGTGAAGGAAGCTCACGAGAAGCTGAAGGTTGGAAGCATTGATGTATTACACTGTTATTATGCCCATGGAGAAGAAAATGAAAACTTTCAACGACGCAGCTATTGGATGCTTGAAGAGGATTTAATGCACATAGTTTTTGTTCACTATCTGGAAGTGAAGGGAACCAGAACTAATGTTGGAGCGCCAAGAGAGACTGATGCTTCATGTTCAAGAAAGAGCAGCCCTACAAGTACTAGTTTTTCCAAAAGTCATGCCAAATCAACTTCTGGTTATCTGGATTCCCTCACCACAACTAGCTCGTTGACTTCTTTGTGTGAAGATGCTGATTCTGAGGATGGCTACCAAGCAACTTCAAATTTCCATTCATTTCCGGAGTTGGCAACAGCACAAACCGGAAGCTCTCCTCTCTTGGCTCAGACGAACATTGGCTTCCCAGATTTTTATTACCAGCGTCCAATCACTGAGCAATCTCAACCAGCTCAGACAGATGGACTTATCGATTTCGATGAAAACTCTCGAGTGATTGATTCTCAAAAAACACTTGGTACGGCCTCTTGGGAAGAGATTTTACAACAGTGTACGAGTGGATCCCACTCTGGACAGTCTGCTGTTCCAACGTCTACAACGAGGCCTATTACATCAGGAATTGTTCCTGGTCAAGAAAATATTAATTCAAGCATTAATTTGTCAGTGGATAGTACTGTCCAAGAGGACCATGGAACTTCTATGGCAGTTTCATCAAATTGGCAGATTCCTGTTGTAGACAATTCATTATCCTTTCCAAAAGAGCATGTGAACCAATTATCAGAGCTTGAAACTGTTTATGATCTGGAGGCAGGTGTGTCTGGGCACAGAAATCAGGACGAAGTCTTTGAAAATTCTCAGAAGTTACATCTTTCTCATCTTGAAATGTTAAATGAACAACATATGTCGAGCAATCTTCAGTACCAACTAGCAAATGGAGAATCTCAGTGCTTGATGAAATTGAATTCTGAGAAAGACTTGATCCTGGATGGAAATGTTCACTATGCTTCAACTTTGCGACAATCACTCTTAGGAGGAGAAGAAGCTTTGAAAAAAGCTGACAGTTTTTCTCGCTGGATATATAGAGAATTAGGGGATGTTGATGATTTGCGTATGCATCCGTCCCCAGGAATTTCATGGAGTGCTGATGAATGTGGAAATATTCATGACGATTCCTCCTTGAGCCCCTCACTCTCTCAAGACCAGCTTTTCAGCATAACTGACTATTCTCCAAAGTGGTCATTCACAGACATGGAAACTGAGGTTCTGATTGTTGGACGATTTCTGGGGATTCACCAAGATGTTGCCAAATGTAATTGGTCATGTATGTTTGGGGAAGTAGAGGTTCCTGCAATGGTTTTGGCCGATGGAATTCTTTGTTGCCGTGCTCCGCCCCATAGTACAGGACAAGTGCCTTTTTATGTAACATTTTCAAACAGATTAGCTTGCAGTGAAGTGCGAGAATTTCAGTATCTGGCTGGCTCTGTCAAGGATGTGGATGTCACAGATATCTATGATGGTGGTACAAATGAATTACTTCTGCATTTGCAATTTGACAGCTTATTATCTCTGAATTGTCTAGCATCTCCTAGCAATATCTTTATAGATGATTTGGAAAAACGAAATGTAATTCGTAAACTTATTGCACTCAAGGAGGAAAAAGATTATATTGTTGAGCCAAATTCTCAGGACGAACTGATCCAGCAGGAGAAAAAGAACTATTTCTTTAAAATCTTGATGAAAGAAATGTTGTACTCATGGCTCCTTCATAAAGTTGTTGAAGATGGAAAAGGACCTAATGTGTGGGATGAAAATGGGCGAGGGGTAATTCATTTGGCTGCCGCTCTTGGTTATGATTGGGCCATGAAACCAATTGTGAGTGCAGGAGTTAGTATAAATTTCCGTGATGTCAATGGATGGACTGCACTTCACTGGGCAGCTTCCTGTGGCAGAGAGCAGATGGTTGCAGTTCTTATCGCTTTGGGCGGTGGCGCTGGTCTCTTGACAGATCCATCTCCTGAATATCCTTTGGGAAGAACACCTGCAGACCTCGCATCTGCCAACGGTCATAAAGGGATCTCTGGATTTTTGGCAGAATCTTCATTGACTAGCCATCTCTCAACTTTAACAATGAATGATACCAAGCAAGACAGTGAAGAAGTTTCATCTGCCAAAGTTGTGCATACTGTTTCTGAAAGAATTGCAACTCCTGCCAATGATGGTTATTTGCCTGGTGAACTGTCTCTAAAGGATTCACTCACAGCTGTTAGTCATGCAACACAAGTCGCTGATCGAATACATCTGATGTTCAGGATGCAGTCGTTTCAGAGGAAACAGTTTGCAGAACACGACGGTGATCAGTTTGAACTTTTAGATGATCGTACACTTTCAATTGTTGCTGCCAGAGCATTAAAGGGCGGACACGGCAACGGGCTTGCACATTCTGCCGCAATTCACATACAGAAAAAGTTTCGTGGTTGGAAAAAAAGAAAAGAGTTCTTGTTGATTCGTCAAAGAATAGTTAAAATACAGGCCCATGTAAGGGGACACCAGGTTCGGAAGAAATACCCATCAATGTTCTGGTCAATAGGAATTGTAGATACTTTATTGCGTTGGAGACGTAAAGGAAGCAGTCTACGGCCGATGGTGGTTCCTAAGGAACCTACCTCTGAAAGCATCCCAGAAGAGGATGACACTGATTTTTTGAAGAAAGGAAGGAGACAAACTGAGGAGAGGTTGCAAAAGGCACTTACTAGAGTTAAGTCTATGGCTCAGGATCCTCAGGGACGAGATCAGTACCGTAGGCTGCTAAATTTAGTACATGGGATTCGTGAAAACAAGGTGTCAGGTATGGCCGTTACAGGTTCAGAGAATAGGGTTGATGAGGAGCTGATTGACTTAGATGATATACTTGACGATGATGCCTTAATGTCTATAACATTTGATTGA 3222 42.02 MGDPGSYGLSPRLDIQQLLLEAKHRWLRPAEICEILRNYQMFRIESEPPHRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEDLMHIVFVHYLEVKGTRTNVGAPRETDASCSRKSSPTSTSFSKSHAKSTSGYLDSLTTTSSLTSLCEDADSEDGYQATSNFHSFPELATAQTGSSPLLAQTNIGFPDFYYQRPITEQSQPAQTDGLIDFDENSRVIDSQKTLGTASWEEILQQCTSGSHSGQSAVPTSTTRPITSGIVPGQENINSSINLSVDSTVQEDHGTSMAVSSNWQIPVVDNSLSFPKEHVNQLSELETVYDLEAGVSGHRNQDEVFENSQKLHLSHLEMLNEQHMSSNLQYQLANGESQCLMKLNSEKDLILDGNVHYASTLRQSLLGGEEALKKADSFSRWIYRELGDVDDLRMHPSPGISWSADECGNIHDDSSLSPSLSQDQLFSITDYSPKWSFTDMETEVLIVGRFLGIHQDVAKCNWSCMFGEVEVPAMVLADGILCCRAPPHSTGQVPFYVTFSNRLACSEVREFQYLAGSVKDVDVTDIYDGGTNELLLHLQFDSLLSLNCLASPSNIFIDDLEKRNVIRKLIALKEEKDYIVEPNSQDELIQQEKKNYFFKILMKEMLYSWLLHKVVEDGKGPNVWDENGRGVIHLAAALGYDWAMKPIVSAGVSINFRDVNGWTALHWAASCGREQMVAVLIALGGGAGLLTDPSPEYPLGRTPADLASANGHKGISGFLAESSLTSHLSTLTMNDTKQDSEEVSSAKVVHTVSERIATPANDGYLPGELSLKDSLTAVSHATQVADRIHLMFRMQSFQRKQFAEHDGDQFELLDDRTLSIVAARALKGGHGNGLAHSAAIHIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKKYPSMFWSIGIVDTLLRWRRKGSSLRPMVVPKEPTSESIPEEDDTDFLKKGRRQTEERLQKALTRVKSMAQDPQGRDQYRRLLNLVHGIRENKVSGMAVTGSENRVDEELIDLDDILDDDALMSITFD 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12049284 12061321 + Bda012667.1 Bda15g00806 22501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00806 1073 Pfam IQ calmodulin-binding motif 929 947 IPR000048 GO:0005515
Bda15g00806 1073 Pfam IQ calmodulin-binding motif 905 924 IPR000048 GO:0005515
Bda15g00806 1073 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Bda15g00806 1073 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 1073 - -
Bda15g00806 1073 Gene3D - 659 799 IPR036770 -
Bda15g00806 1073 SUPERFAMILY Ankyrin repeat 679 790 IPR036770 -
Bda15g00806 1073 Pfam IPT/TIG domain 496 581 IPR002909 -
Bda15g00806 1073 SMART CG_1_2 18 136 IPR005559 GO:0003677
Bda15g00806 1073 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 5 1073 - -
Bda15g00806 1073 ProSiteProfiles IQ motif profile. 904 933 IPR000048 GO:0005515
Bda15g00806 1073 SMART iq_5 903 925 IPR000048 GO:0005515
Bda15g00806 1073 SMART iq_5 926 948 IPR000048 GO:0005515
Bda15g00806 1073 ProSiteProfiles IQ motif profile. 927 951 IPR000048 GO:0005515
Bda15g00806 1073 MobiDBLite consensus disorder prediction 143 174 - -
Bda15g00806 1073 ProSiteProfiles Ankyrin repeat region circular profile. 729 753 - -
Bda15g00806 1073 SMART ANK_2a 768 797 IPR002110 GO:0005515
Bda15g00806 1073 SMART ANK_2a 696 725 IPR002110 GO:0005515
Bda15g00806 1073 SMART ANK_2a 729 758 IPR002110 GO:0005515
Bda15g00806 1073 Gene3D Immunoglobulins 490 586 IPR013783 -
Bda15g00806 1073 CDD IPT 496 583 - -
Bda15g00806 1073 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Bda15g00806 1073 Gene3D - 904 951 - -
Bda15g00806 1073 ProSiteProfiles Ankyrin repeat profile. 729 761 IPR002110 GO:0005515
Bda15g00806 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 954 IPR027417 -
Bda15g00806 1073 SUPERFAMILY E set domains 497 582 IPR014756 -
Bda15g00806 1073 Coils Coil 997 1017 - -
Bda15g00806 1073 MobiDBLite consensus disorder prediction 144 174 - -
Bda15g00806 1073 Pfam Ankyrin repeats (3 copies) 701 790 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00806 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1245.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01181 Bda-Chr3:13857554 Bda15g00806 Bda-Chr15:12049284 3.06E-42 dispersed
Bda08g00183 Bda-Chr8:1671051 Bda15g00806 Bda-Chr15:12049284 1.93E-45 dispersed
Bda08g00311 Bda-Chr8:3247593 Bda15g00806 Bda-Chr15:12049284 2.50E-17 dispersed
Bda08g00378 Bda-Chr8:3870823 Bda15g00806 Bda-Chr15:12049284 2.17E-35 dispersed
Bda15g00806 Bda-Chr15:12049284 Bda01g01964 Bda-Chr1:56026064 1.73E-06 dispersed
Bda15g00806 Bda-Chr15:12049284 Bda03g00957 Bda-Chr3:8670113 3.21E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00806 . 1 1073 CAMTA Transcription Factor Family AT5G64220 51.9 6.8e-268 920.6
Bda03g01181 . 28 919 CAMTA Transcription Factor Family AT3G16940 53.7 7.4e-262 900.2
Bda03g01166 BCT 28 652 CAMTA Transcription Factor Family AT3G16940 54.8 1.6e-192 669.8
Bda03g01181 . 7 635 CAMTA Transcription Factor Family AT4G16150 55.7 4.2e-205 711.8
Bda08g00378 BCT 9 660 CAMTA Transcription Factor Family AT4G16150 53.6 1.1e-200 697.2
Bda03g01166 BCT 49 377 CAMTA Transcription Factor Family AT4G16150 53.5 5.8e-106 382.5
Bda15g00806 . 1 1073 CAMTA Transcription Factor Family AT5G64220 51.9 6.8e-268 920.6
Bda03g01181 . 7 635 CAMTA Transcription Factor Family AT4G16150 55.7 4.2e-205 711.8
Bda08g00378 BCT 9 660 CAMTA Transcription Factor Family AT4G16150 53.6 1.1e-200 697.2
Bda03g01166 BCT 49 377 CAMTA Transcription Factor Family AT4G16150 53.5 5.8e-106 382.5
Bda03g01181 . 28 919 CAMTA Transcription Factor Family AT3G16940 53.7 7.4e-262 900.2
Bda03g01166 BCT 28 652 CAMTA Transcription Factor Family AT3G16940 54.8 1.6e-192 669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17214 PF12796 Ank_2 1.60E-07 CL0465 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00806 Bda_Chr15 FPKM 2.600066 2.870577 1.107233 1.235411 1.914286 1.707726 2.293893 3.128986 2.521058