Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00841 ATGGCGGATAAAGACGGTCTGGAAGGGGACAACCTTTCAGCCACAGCTGATGCATCCAATGTCTCTCACTTACTGTTTTCAGATATTGGTGAGTTTGATTTAATGGACGGGGTTGATGGTGACTACTCATTCGGCTTTTCTTCCCCTCATTTTCTCGACAAAAAGACACCCAAAATGCTCCGCTTTGGGAACTTTCAGAGCAAGCAACTACATCTTCACAAATTTGGAATCTCTTGCAGTGATTCTTCTTCTTCTTCAGGCAACGACTGTGATATAAACGCTTTGCGTTCGGCTAATGCGAAGAGAAGTGGGTCTGGGCTGGATCCCGGTATCGTCTCCGTATCTCCGATTGTATCTCCGATGCCAAATCAGAGAACTTCGAAGAAGATTAAGTCCGATAATCCCAATTTAACCAGCCATGCAAAGAGGAAGGAAAAGTTAGGAGAACGAGTCGCGACACTACAGCAGCTAGTGTCTCCATTCGGAAAGATGGAATTGCAGACAGATACATCGTCCGTTCTTCACGAAGCGATGGGATATATTAAGTTTCTTCACGAACAGGTTCAGGTCCTGTGTTGCCCATACTTGCAAAATCTGCCATTTTTATCTGGGAAGAAGAGGAGGACAAAAGATACAAACTTAAGGAGCAGAGGGCTATGTCTGGTTCCAGTAGAGACTACTTTAAACATGACGAGCAACAATGGCGCTGATCTCTGGTTACCTGGGATGAAGAAAAACTCCACAAAGCACTGA 753 44.89 MADKDGLEGDNLSATADASNVSHLLFSDIGEFDLMDGVDGDYSFGFSSPHFLDKKTPKMLRFGNFQSKQLHLHKFGISCSDSSSSSGNDCDINALRSANAKRSGSGLDPGIVSVSPIVSPMPNQRTSKKIKSDNPNLTSHAKRKEKLGERVATLQQLVSPFGKMELQTDTSSVLHEAMGYIKFLHEQVQVLCCPYLQNLPFLSGKKRRTKDTNLRSRGLCLVPVETTLNMTSNNGADLWLPGMKKNSTKH 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12886514 12888054 + Bda012712.1 Bda15g00841 22536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00841 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 184 IPR011598 GO:0046983
Bda15g00841 250 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 232 - -
Bda15g00841 250 MobiDBLite consensus disorder prediction 117 134 - -
Bda15g00841 250 CDD bHLH_AtbHLH_like 142 191 IPR045239 -
Bda15g00841 250 MobiDBLite consensus disorder prediction 112 146 - -
Bda15g00841 250 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 58 232 - -
Bda15g00841 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 195 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00841 - - - vvi:100249018 196.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00540 Bda-Chr13:6409167 Bda15g00841 Bda-Chr15:12886514 1.35E-34 dispersed
Bda15g00841 Bda-Chr15:12886514 Bda01g01505 Bda-Chr1:50903017 5.34E-21 dispersed
Bda15g00841 Bda-Chr15:12886514 Bda12g00875 Bda-Chr12:39446790 3.94E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g648 . . . . . Bpe12g00300 . . Cmo19g00585 . . . . . . . Cpe15g00457 . . . . . . . Cla02g00654 Cam02g0688 Cec02g0700 Cco02g0721 Clacu02g0694 Cmu02g0690 Cre02g1007 . Cone8ag1099 . . Lsi03g00549 Csa07g00710 . Cme01g00096 . . Bda15g00841 . . . . . . . . . Cma19g00571 . Car19g00430 . . . . . . . . . . . . . . . . . . Chy01g00105 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010226 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00841 Bda_Chr15 FPKM 1.197368 0.678386 0.0 0.0 0.0 0.0 0.0 0.0 0.0