Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00846 ATGGAATTACATCCGAACGACCCACAGAACCAGACCCCTTCCTTGTTTCTGGACTCCCTATACTGTGAGGATGAAAAATGGGACGAGGAGCAAGAAACAGTAGATCAAGGTTTTTCAGTAGCGACGAGTAGGAATGGCGTCGTCTGTAATCTCTCCTGTGAAGAAGCTCCAGCTTTTTGGGTAGATGAAGAGCTTTTATCTCTTTTCTCTAGAGAGGAAGAACAGCTGCGCCAAACCCATGTCTGTCTAGCAAGTTTGAAAGCAGATCGACACCTCGCTGCAGCTCGTTCTGAGGCTGTGGAATGGATTCTAAAAGTGAATGCTCATTACGGATTTACTGCCCTTACGGCCATTTTAGCCATTAACTATCTTCAAAGGTTTCTCTCTAGCCTCCATTTTCAGAGAGATAAACCTTGGATTGTTCAGCTTGTCGCTGTCACTTGTCTCTCTTTGGCCGCAAAAGTGGAAGAAATCCAAGTTCCTCTTCTTCTAGACCTCCAAGTGGAAGGGACTAAATTTGTTTTTGAAGCGAAAACAATACAGAAAATGGAGTTGTTAGTGCTATCGAGTCTTCAATGGCGGATGCATCCAGTGACCCCACTTTCATTTCTCGACCACATCATGAAAAGGTTGGGATTTGATAACCATCTTTATTGGGAGTTTATCAGATGCTGTGAGAGTCTCCTTCTCTCTCTATCCTCAGACTCAAGATCCATCATTTATCTCCCTTCTGTGATTGCCACTGCAACAATGATGCACGCCATTGAACAGCTCGAAGGCTGTAGCCCATTACAGGCTCAACTTCTGAATGTCCTTAACATAGTAAGGGAAAGGGTGGAAGAGTGTTATAAACTTATAAAAGAGGTGAAGGTCTTCGTCAATAATCCTCTCAAGCGTAAGGAGCGAGCTCCAAGGAGCCCAAGCGGAGTGATGGATGGCTTCTTGAGCTCAGATAGCTCCAATGATTCCTGGCTGTCAATCGGTTCATCTTCTTCATCAGTTTATTCATCGCCAGAACCTCCATTCAAGAAGAGCAGAGGCCAAGACCAGCAAATGAGGTTGCCTTCTTTACTCAACCGAGTTTTCATTGATGTTGGTGCCAGCCCTCCTTAG 1113 44.92 MELHPNDPQNQTPSLFLDSLYCEDEKWDEEQETVDQGFSVATSRNGVVCNLSCEEAPAFWVDEELLSLFSREEEQLRQTHVCLASLKADRHLAAARSEAVEWILKVNAHYGFTALTAILAINYLQRFLSSLHFQRDKPWIVQLVAVTCLSLAAKVEEIQVPLLLDLQVEGTKFVFEAKTIQKMELLVLSSLQWRMHPVTPLSFLDHIMKRLGFDNHLYWEFIRCCESLLLSLSSDSRSIIYLPSVIATATMMHAIEQLEGCSPLQAQLLNVLNIVRERVEECYKLIKEVKVFVNNPLKRKERAPRSPSGVMDGFLSSDSSNDSWLSIGSSSSSVYSSPEPPFKKSRGQDQQMRLPSLLNRVFIDVGASPP 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12997850 12999358 - Bda012719.1 Bda15g00846 22541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00846 370 SUPERFAMILY Cyclin-like 199 289 IPR036915 -
Bda15g00846 370 CDD CYCLIN 96 188 IPR013763 -
Bda15g00846 370 Pfam Cyclin, C-terminal domain 198 296 IPR004367 -
Bda15g00846 370 PANTHER CYCLIN D3.1 PROTEIN 41 346 - -
Bda15g00846 370 SUPERFAMILY Cyclin-like 58 196 IPR036915 -
Bda15g00846 370 Gene3D - 69 284 - -
Bda15g00846 370 Pfam Cyclin, N-terminal domain 69 195 IPR006671 -
Bda15g00846 370 MobiDBLite consensus disorder prediction 318 339 - -
Bda15g00846 370 SMART Cyclin_C_2 198 338 IPR004367 -
Bda15g00846 370 PANTHER CYCLINS 41 346 IPR039361 -
Bda15g00846 370 SMART cyclin_7 101 189 IPR013763 -
Bda15g00846 370 MobiDBLite consensus disorder prediction 318 355 - -
Bda15g00846 370 Gene3D - 78 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00846 K14505 CYCD3; cyclin D3, plant - tcc:18607985 379.022
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00772 Bda15g00846 CCT
Bda08g00772 Bda15g00846 ECH
Bda14g01452 Bda15g00846 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00772 Bda-Chr8:10024538 Bda15g00846 Bda-Chr15:12997850 9.68E-96 dispersed
Bda11g01447 Bda-Chr11:19956301 Bda15g00846 Bda-Chr15:12997850 3.38E-78 dispersed
Bda15g00846 Bda-Chr15:12997850 Bda01g02234 Bda-Chr1:58166437 1.34E-44 dispersed
Bda14g01452 Bda-Chr14:19597163 Bda15g00846 Bda-Chr15:12997850 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003809 3 1 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00846 Bda_Chr15 FPKM 5.777778 5.925078 4.617569 6.13294 6.178929 3.688358 4.449764 4.450125 4.987849