Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00849 ATTATGGACTTGAAACACAACATTCGTAATATGTCTGTCATTGCACATGTTGATCATGGAAAGTCAACCCTTACCGATTCGCTTGTTGCTGCTGCTGGTATCATTGCACAGGAGGTCGCAGGTGATGTTCGGATGACAGATACTCGTGCTGATGAAGCAGAACGCGGTATCACTATTAAATCCACTGGAATTTCATTATACTATGAAATGTCGGATGAGTCTTTGAAGAATTACAAGGGAGAGCGAGTTGGAAATGAGTATCTCATAAATCTCATTGATTCTCCTGGACATGTTGACTTCTCCTCTGAGGTCACTGCTGCTCTTCGTATCACTGATGGTGCACTGGTGGTGGTAGATTGCATTGAAGGAGTTTGCGTCCAGACTGAAACTGTCCTCCGGCAGGCTCTTGGAGAGAGAATTAGGCCTGTTTTGACAGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAGGTTGACGGAGAAGAAGCTTATCAAACATTCCAAAGGGTCATTGAGAATGCAAATGTCATAATGGCCACATATGAGGATCCTCTTCTTGGTGATGTGCAGGTCTATCCTGAGAAAGGAACTGTGGCGTTCTCTGCTGGTTTACATGGTTGGGCTTTCACGTTGACCAACTTTGCAAAAATGTATGCCTCCAAATTTGGGGTTGATGAGTCAAAGATGATGGAGAGGCTTTGGGGCGAAAATTTCTTTGATCCTGCCACTAAAAAATGGACCAGCAAAAATACAGGTTCTGCAACATGCAAGCGTGGATTTGTTCAGTTCTGTTATGAGCCCATCAAGCAAATTATCGCCACTTGCATGAACGACCAGAAGGATAAGCTTTGGCCTATGTTGAAAAAGTTGGGTGTGACTATGAAGTCGGATGAGAAGGAATTGATGGGCAAGGCGCTGATGAAACGAGTCATGCAAACTTGGCTACCAGCTAGCACAGCTCTCTTGGAAATGATGATCTTTCATCTTCCTTCTCCATCAAAGGCCCAGAGGTATCGTGTTGAGAATTTGTATGAGGGCCCTCTTGATGACCAATATGCTACCGCAATTAGAAACTGTGACCCTGATGGACCACTGATGCTCTATGTGTCAAAGATGATTCCGGCATCTGACAAGGGTCGGTTCTTTGCTTTTGGTCGTGTTTTCTCTGGTAGAGTTGCCACTGGTATGAAAGTGAGGATTATGGGGCCTAACTACGTTCCTGGTGAGAAAAAGGACTTATATGTTAAAAGTGTTCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACTGTTGAGGATGTTCCTTGTGGGAACACAGTGGCCATGGTTGGGCTCGATCAGTTTATTACCAAAAATGCTACTTTGACGAATGAGAAAGAAGTTGATGCACACCCAATTCGAGCTATGAAATTTTCAGTTTCACCAGTTGTACGAGTGGCTGTTCAGTGCAAGGTGGCATCTGACCTTCCCAAGCTTGTTGAAGGACTAAAACGTTTGGCAAAGTCGGATCCTATGGTTGTTTGTTCAATAGAAGAGTCTGGAGAGCACATAATCGCAGGGGCTGGAGAATTGCACCTTGAAATCTGTTTGAAGGATTTGCAGGACGACTTCATGGGCGGTGCTGAAATTGTGAAATCTGATCCTGTGGTTTCATTCCGTGAGACCGTTCTTGAGAAGTCGTGTCGAACAGTCATGAGTAAGTCGCCCAATAAACATAACCGACTGTACATGGAAGCTCGACCATTGGAAGATGGACTTGCTGAGGCAATTGATGATGGTCGAATTGGCCCAAGAGATGACCCAAAAGTGCGTTCAAAAATTTTGGCAGAGGAGTTCGGTTGGGACAAGGATCTTGCCAAAAAGATATGGTGTTTCGGCCCTGAAACAACTGGGCCCAATATGGTTGTGGATATGTGTAAGGGAGTTCAGTATCTCAATGAAATAAAGGACTCCGTCGTTGCTGGATTTCAGTGGGCATCAAAAGAAGGTGCCTTGTGTGAAGAAAACATGAGGGGCATATGTTTTGAAGTTTGCGATGTGGTTCTGCACGCTGATGCAATCCACAGAGGAGGTGGTCAGGTTATCCCTACTGCTAGGAGGGTCATCTATGCTTCCCAAATCACAGCCAAGCCCCGACTTCTCGAGCCAGTGTATTTGGTGGAGATCCAAGCACCTGAGCAGGCACTTGGAGGTATTTATAGCGTTCTTAACCAGAAACGTGGGCATGTGTTCGAAGAAATGCAGAGGCCTGGTACCCCTCTCTATAACATCAAGGCCTACCTCCCTGTGGTTGAGTCCTTTGGTTTTTCGGGCACTCTGCGGGCTGCCACCTCTGGGCAGGCGTTTCCTCAGTGTGTGTTTGATCATTGGGATATGATGTCGTCCGACCCGTTAGAACCTGGATCCCAGGCTGCCAATCTTGTTGTTGAAATTCGAAAGAGGAAGGGTTTGAAGGAGCAGATGACGCCACTCTCTGATTTCGAGGACAAGCTATAA 2499 45.78 IMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDESLKNYKGERVGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLKKLGVTMKSDEKELMGKALMKRVMQTWLPASTALLEMMIFHLPSPSKAQRYRVENLYEGPLDDQYATAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGRIGPRDDPKVRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALCEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQITAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAANLVVEIRKRKGLKEQMTPLSDFEDKL 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13249945 13252989 + Bda012729.1 Bda15g00849 22544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00849 832 Gene3D - 1 226 IPR027417 -
Bda15g00849 832 PRINTS GTP-binding elongation factor signature 10 23 IPR000795 GO:0003924|GO:0005525
Bda15g00849 832 PRINTS GTP-binding elongation factor signature 106 117 IPR000795 GO:0003924|GO:0005525
Bda15g00849 832 PRINTS GTP-binding elongation factor signature 54 62 IPR000795 GO:0003924|GO:0005525
Bda15g00849 832 PRINTS GTP-binding elongation factor signature 90 100 IPR000795 GO:0003924|GO:0005525
Bda15g00849 832 PRINTS GTP-binding elongation factor signature 142 151 IPR000795 GO:0003924|GO:0005525
Bda15g00849 832 PANTHER - 1 831 - -
Bda15g00849 832 TIGRFAM small_GTP: small GTP-binding protein domain 9 165 IPR005225 GO:0005525
Bda15g00849 832 Gene3D Elongation Factor G (Translational Gtpase), domain 3 475 552 - -
Bda15g00849 832 SMART EFG_C_a 713 802 IPR000640 -
Bda15g00849 832 Gene3D - 558 711 IPR014721 -
Bda15g00849 832 Pfam Elongation factor Tu domain 2 383 456 IPR004161 GO:0005525
Bda15g00849 832 SUPERFAMILY EF-G C-terminal domain-like 716 825 IPR035647 -
Bda15g00849 832 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 831 - -
Bda15g00849 832 Pfam Elongation factor G C-terminus 713 799 IPR000640 -
Bda15g00849 832 SUPERFAMILY EF-G C-terminal domain-like 473 549 IPR035647 -
Bda15g00849 832 SUPERFAMILY Ribosomal protein S5 domain 2-like 551 715 IPR020568 -
Bda15g00849 832 Pfam Elongation Factor G, domain III 476 538 IPR041095 -
Bda15g00849 832 SUPERFAMILY Translation proteins 332 465 IPR009000 -
Bda15g00849 832 Gene3D - 712 832 - -
Bda15g00849 832 CDD EF2_snRNP_III 476 548 - -
Bda15g00849 832 Gene3D Translation factors 332 473 - -
Bda15g00849 832 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 6 333 IPR000795 GO:0003924|GO:0005525
Bda15g00849 832 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 IPR031157 -
Bda15g00849 832 Pfam Elongation factor Tu GTP binding domain 6 331 IPR000795 GO:0003924|GO:0005525
Bda15g00849 832 CDD EF2 9 219 - -
Bda15g00849 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 330 IPR027417 -
Bda15g00849 832 CDD EF2_II 364 459 - -
Bda15g00849 832 CDD aeEF2_snRNP_like_IV 548 720 - -
Bda15g00849 832 CDD eEF2_snRNP_like_C 716 794 - -
Bda15g00849 832 Pfam Elongation factor G, domain IV 599 710 IPR005517 GO:0005525
Bda15g00849 832 SMART EFG_IV_2 595 711 IPR005517 GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01973 Bda-Chr1:56110195 Bda15g00849 Bda-Chr15:13249945 0 dispersed
Bda06g00254 Bda-Chr6:4429824 Bda15g00849 Bda-Chr15:13249945 0 dispersed
Bda07g00811 Bda-Chr7:9592429 Bda15g00849 Bda-Chr15:13249945 1.22E-129 dispersed
Bda08g00560 Bda-Chr8:5700115 Bda15g00849 Bda-Chr15:13249945 3.10E-42 dispersed
Bda15g00849 Bda-Chr15:13249945 Bda14g01131 Bda-Chr14:10342606 2.71E-22 dispersed
Bda15g00849 Bda-Chr15:13249945 Bda04g01109 Bda-Chr4:61986941 3.21E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00849 K03234 - cit:102616841 1622.06