Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00851 ATGGCCGTTGAAGCTCGGTACCTAAATTGCTTCCCTCCTCAACTCATCGGAAACAGCAGGGAAATTATGAATCCTATCAAGGGAAATACAAACGTTTACAACTCTATGGCTGGATACGGAGTGCCATTGTCAGGAACCACCACCGCCGAGAGCCTTCTCCCGGCGTACAATTCAGTCATCGTGGATTCGTTTCCGCAGAAAGCATTCGCCGGCGCTACGAAATGTGACAGTGGCATAACTTACAACGTTCCTTTATGCAGAAAGCGGATGAGAGACTCTGTAACCCCGTTTCTCTCCTACCCAGTTTCCCAGAAGCCGAAAACGTGCGGCTTCTTCTCATTTCTTGGCGAAGACATTACGCTCCAGATCCAAAATCAGAATATGGAAGCACGCGATCTTATCGATCAACATATGGAAAAGATGAAGTTGGAGATAGAAGAAAAGCGAAAAACTCAGGCTAGAAAAATACTACAAGAAATAGAATTGGGGATGGTGAGGAGGCTGAGGGCGAAAGAGATAGAGATTGAAACTATTGGAAAAATGAACTGGGAGCTCGAAGAAAGAGTAAAATCCCTAAGCTTGGAGAATCAGATATGGAGAGATGTAGCGCAGACGAACGAGGCGACCGTAAACGCTCTACGCACAAACCTGGAACAGCTGTTGGCGCAGTTGAAGGAAGAGCGAAGAACGGACGACCACCCAGGAGCAGCAATAATGGACGACGCGCAGTCATGCTGCGGAAGCAATGGCGGGGAAGAAAACGAAGAAAGAGGAGAAGAGAATAGCAGTAATGGAGGTGGAGGTAGAATGTGCAGGAACTGTGGGAAAGAGGAGTCGTGCGTGCTGATCCTGCCATGCAGACACTTGTGTCTATGTACTGTTTGTGGGTCATCGCTTCATATTTGCCCCATTTGTAAATCCACCAGAAACACAACTGTTCACATTAACTTGTAA 954 47.17 MAVEARYLNCFPPQLIGNSREIMNPIKGNTNVYNSMAGYGVPLSGTTTAESLLPAYNSVIVDSFPQKAFAGATKCDSGITYNVPLCRKRMRDSVTPFLSYPVSQKPKTCGFFSFLGEDITLQIQNQNMEARDLIDQHMEKMKLEIEEKRKTQARKILQEIELGMVRRLRAKEIEIETIGKMNWELEERVKSLSLENQIWRDVAQTNEATVNALRTNLEQLLAQLKEERRTDDHPGAAIMDDAQSCCGSNGGEENEERGEENSSNGGGGRMCRNCGKEESCVLILPCRHLCLCTVCGSSLHICPICKSTRNTTVHINL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13267818 13268952 - Bda012732.1 Bda15g00851 22546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00851 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 316 IPR013083 -
Bda15g00851 317 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 317 - -
Bda15g00851 317 Coils Coil 203 230 - -
Bda15g00851 317 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 317 IPR017066 -
Bda15g00851 317 MobiDBLite consensus disorder prediction 247 267 - -
Bda15g00851 317 Pfam Zinc finger, C3HC4 type (RING finger) 269 308 - -
Bda15g00851 317 ProSiteProfiles Zinc finger RING-type profile. 271 306 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00851 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - pop:18095766 375.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g01294 Bda15g00851 CCT
Bda08g01294 Bda15g00851 ECH
Bda14g00540 Bda15g00851 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01274 Bda-Chr11:13349207 Bda15g00851 Bda-Chr15:13267818 9.50E-26 dispersed
Bda01g00124 Bda-Chr1:19870739 Bda15g00851 Bda-Chr15:13267818 1.78E-63 transposed
Bda04g00138 Bda-Chr4:3370580 Bda15g00851 Bda-Chr15:13267818 8.26E-57 transposed
Bda06g00256 Bda-Chr6:4445411 Bda15g00851 Bda-Chr15:13267818 2.42E-87 transposed
Bda14g00617 Bda-Chr14:4650435 Bda15g00851 Bda-Chr15:13267818 6.09E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g557 . . . Bda08g01294 . Bpe12g00075 . . . Cmo11g01316 Cma02g00424 . Car02g00280 . Sed01g4040 Cpe04g00245 . Bhi05g01197 Tan02g1941 Cmetu09g0736 . . . . Cla02g00545 Cam02g0568 Cec02g0571 Cco02g0582 Clacu02g0569 Cmu02g0565 Cre02g0896 Cone12ag1137 Cone8ag1184 . . Lsi10g00336 . Chy11g00415 Cme01g01471 . . Bda15g00851 Bda14g00540 Bpe15g00876 . Bma03g00542 . . Cmo02g00425 . . . Car11g01060 . . Cpe05g01237 . . . . . . . Cla09g01744 Cam09g1835 Cec09g1896 Cco09g1988 . . Cre01g0675 Lsi11g01070 Csa02g01223 Chy01g00822 Cme11g00474
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001336 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00851 Bda_Chr15 FPKM 9.924091 10.999948 9.123133 7.104297 5.157142 4.022259 6.012411 17.412228 20.007269