Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00854 ATGTACTTCACCGTCGTCACTCTCTGTACCATTGGCTATGGCGATATAGTTCCGGATTCCACATTTACAAAAATTTTTACTTGCGTTTTCATACTTGTTGGTTTTGGATTCCTTGACATTTTGCTCAACGGATTGGTCGTTTACATATGCGATCGTCAAGAGGCGGTCTTGCTGAGTACCGTCGACGAGAATCGATTCAACGCCATGATTAGAACTTATATGGTCGACAGAGAAAAGGGAAGAATGAGAATAAGAACGAAGGTGTGTTTGGCTGTGGGTATTGTTATTATCTGCATTGCAGTAGGGACAATCGCCATACATTTTCTGGAGACATTAACTTGGGTTGATAGCATCTACCTCTCGATTACTTCTGTGTCAACAGTGGGCTATGGAGATTTCTCTTTCACGACTGTAGAAGGAAGGTGCTTTGCAATTATCTGGCTGTTGGTCAGCACTTTGGCTGTTGCCAGGGCCTTTCTGTATCTGACTGAGTTCAGGATCGACAAAAGAAACAGAAAAACCATGACGTGGGTTCTTCAGAAGAAGATAACGATTGGGGATTTAGTGGCTGCCGACATAGATCACAATGGATTTATCAGCAAATCTGAGTTTGTCATTTACAAGCTGAAAGAGATGGGGAAAATCTCAGAGAAAGATGTTGTAATGATCGGTAAACAATTTGATTTATTGGACTCGAGCAACTGTGGCAAAATAACACTAGCTGATCTCATGGAAGATTAA 741 41.57 MYFTVVTLCTIGYGDIVPDSTFTKIFTCVFILVGFGFLDILLNGLVVYICDRQEAVLLSTVDENRFNAMIRTYMVDREKGRMRIRTKVCLAVGIVIICIAVGTIAIHFLETLTWVDSIYLSITSVSTVGYGDFSFTTVEGRCFAIIWLLVSTLAVARAFLYLTEFRIDKRNRKTMTWVLQKKITIGDLVAADIDHNGFISKSEFVIYKLKEMGKISEKDVVMIGKQFDLLDSSNCGKITLADLMED 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13401791 13402668 - Bda012739.1 Bda15g00854 22549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00854 246 PRINTS Two pore domain K+ channel signature 126 135 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bda15g00854 246 PRINTS Two pore domain K+ channel signature 6 34 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bda15g00854 246 SUPERFAMILY EF-hand 190 244 IPR011992 -
Bda15g00854 246 Pfam Ion channel 1 46 IPR013099 -
Bda15g00854 246 Pfam Ion channel 94 164 IPR013099 -
Bda15g00854 246 Gene3D - 188 246 - -
Bda15g00854 246 Gene3D - 1 58 - -
Bda15g00854 246 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Bda15g00854 246 PANTHER OS01G0696100 PROTEIN 1 242 - -
Bda15g00854 246 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 1 242 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bda15g00854 246 Gene3D - 64 185 - -
Bda15g00854 246 SUPERFAMILY Voltage-gated potassium channels 1 51 - -
Bda15g00854 246 SUPERFAMILY Voltage-gated potassium channels 76 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00075 Bda-Chr2:2986172 Bda15g00854 Bda-Chr15:13401791 4.77E-108 dispersed
Bda09g00436 Bda-Chr9:5782644 Bda15g00854 Bda-Chr15:13401791 2.94E-55 dispersed
Bda14g01437 Bda-Chr14:18739862 Bda15g00854 Bda-Chr15:13401791 1.74E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00854 K05389 - jre:109019999 413.69