Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00870 ATGGAGATGAAGAGCGCAGTAGGAGAGATTGTTGAAGTCGATGGTGGTCATATCGTCCGTTCCACTGGCCGAAAAGACCGACACAGCAAGGTCTACACAGCGAAAGGCCCTCGCGACCGTCGTGTCCGGCTTTCAGCCCACACCGCAATTCAGTTCTACGACGTTCAAGATCGCTTAGGCTATGATCGACCCAGCAAAGCGGTCGATTGGCTTATAAAAAAGGCAAAGTCCGCTATTGACAAGCTCACAGAGTTACCGCCTTGCTATGCCACCACCATCGCTGCAGATGCTGACACGAATAATGGCGGTAACGAGATGGTGATTTCTGCAGATCAATCGGAGTCATCCGGATACAATTTGCACCTTCAAAGACATTTGGATGAGAATCCAGATAATAATAATTTGGGTTTCGTTCCTCCTCCGCTGTCTTCAGTTGCCCTAACAGACAGTATGAAAACCTTCTTCCCCACAAGCTCTGGGGCGTCCCCCATCAATTTCCAGACCTTCCCACCAGATATACTTTCACGAACAGCAAACCCCATTCAAGATCTTGGCCTTTCTCTCCATACTTTTCAAGATCCTGGTCTGATTCACTCTCAGGGAGAGTCAAACCACTCGCCACAGACCGATCAAAACCTTTTCTCCGGCTCGCATCAGGTAGGGTTTGAACCGAGTTACCAGAGAATGGCAGCTTGGGGAAATGATAGAGGCGCTGAACATGGAGGTGGGTTTGTTTTCAGCTCGCTGCCAATTTTCGGCCAGGGTGGCTCGGCTGCATTATCACAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCTGCGTCATTTCGTGGGTGGAACGATCTTTCAATTGCTGCATCCAAAGACCAGAAGACTCATTCACTTCACCAATCTTCGTTATTTGGCACTCGTTTCGTTTCTGATGGGCTACATGGCTTTTGCATTCCCGGACAGAGTCCGGCCGACGATGACAGCGGTATGGTTTCCGAACGATTGTCATCTTCTTCTATGAACTCCCACCGTTGA 1026 49.71 MEMKSAVGEIVEVDGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLTELPPCYATTIAADADTNNGGNEMVISADQSESSGYNLHLQRHLDENPDNNNLGFVPPPLSSVALTDSMKTFFPTSSGASPINFQTFPPDILSRTANPIQDLGLSLHTFQDPGLIHSQGESNHSPQTDQNLFSGSHQVGFEPSYQRMAAWGNDRGAEHGGGFVFSSLPIFGQGGSAALSQRGPLQSSYSPSASFRGWNDLSIAASKDQKTHSLHQSSLFGTRFVSDGLHGFCIPGQSPADDDSGMVSERLSSSSMNSHR 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14028472 14029497 - Bda012763.1 Bda15g00870 22565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00870 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 340 IPR005333 GO:0003700
Bda15g00870 341 MobiDBLite consensus disorder prediction 316 341 - -
Bda15g00870 341 Pfam TCP family transcription factor 23 101 IPR017887 -
Bda15g00870 341 PANTHER TRANSCRIPTION FACTOR TCP4 3 340 - -
Bda15g00870 341 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00870 - - - qsu:112040076 393.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00492 Bda-Chr6:6981959 Bda15g00870 Bda-Chr15:14028472 9.67E-16 dispersed
Bda13g01761 Bda-Chr13:40950714 Bda15g00870 Bda-Chr15:14028472 6.12E-20 dispersed
Bda15g00655 Bda-Chr15:10022440 Bda15g00870 Bda-Chr15:14028472 1.06E-13 dispersed
Bda15g00870 Bda-Chr15:14028472 Bda09g00872 Bda-Chr9:22314434 2.53E-24 dispersed
Bda15g00925 Bda-Chr15:16069852 Bda15g00870 Bda-Chr15:14028472 0 transposed
Bda14g01404 Bda-Chr14:17469804 Bda15g00870 Bda-Chr15:14028472 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00079 . 35 261 TCP Transcription Factor Family AT5G23280 53.2 1.3e-52 203.4
Bda14g00462 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda14g00488 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda15g00075 . 35 260 TCP Transcription Factor Family AT5G23280 53.0 2.3e-52 202.6
Bda14g00846 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 80.8 3.0e-40 163.3
Bda12g00454 . 1 287 TCP Transcription Factor Family AT3G27010 53.4 1.2e-66 250.4
Bda07g01383 . 7 243 TCP Transcription Factor Family AT3G27010 57.9 4.5e-58 221.9
Bda14g00462 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda14g00488 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda15g00079 . 35 259 TCP Transcription Factor Family AT5G08330 54.1 5.1e-54 208.0
Bda15g00075 . 35 258 TCP Transcription Factor Family AT5G08330 53.3 7.4e-53 204.1
Bda12g00823 BCT 18 223 TCP Transcription Factor Family AT1G53230 52.1 2.4e-45 179.9
Bda09g00513 . 18 272 TCP Transcription Factor Family AT3G15030 50.4 1.3e-55 214.2
Bda14g00885 BCT 31 173 TCP Transcription Factor Family AT5G60970 57.6 3.7e-40 162.5
Bda14g01404 . 23 209 TCP Transcription Factor Family AT2G31070 54.0 4.7e-43 172.2
Bda15g00870 . 8 192 TCP Transcription Factor Family AT2G31070 53.5 2.2e-40 163.3
Bda15g00925 . 25 208 TCP Transcription Factor Family AT2G31070 53.3 2.9e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17217 PF03634 TCP 5.30E-32 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00870 Bda_Chr15 FPKM 2.62736 2.598089 9.191124 11.057142 8.934442 10.80431 12.813805 12.226382 11.167139