Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00903 ATGGCCAGGATCCTCGAGAGACTATCATTTGGACTGTGGATTGCGACGGTGAGCTTGCTGCTGTCGGAAAATAGGTTGGTCCAGTCCACTCATCTTAAGCACAACGTCGCATCGGAGCATTGGCTTCCCGCTACAGCCACTTGGTACGGAAGCCCAGAAGGCGACGGAAGCGACGGAGGAGCGTGTGGGTATGGAAACTTAGTGGATGTGAAGCCATTGAGGGCAAGGGTAGGCGCGGTGAGCCCAGTTTTGTTCAAGAATGGCGAGGGCTGCGGAGCTTGCTTCAAGGTAAAGTGCTTGGACCAAACCATATGCACTAGACGAGCCGTGACTATAATCGTGACAGACGAGTGCCCCGGTGGATACTGTGCCGGTGGCCGCACCCACTTCGACCTCAGCGGCGCCGCCTTCGGCCGCATGGCTGTATCCGGTGAAAGTGGGCACCTCAGGAACCGAGGCGAAATCCCAGTCATCTACAAAAGGTGGACTCAATGCAAATATCCCGGCAAGAACATAGCTTTCCACGTGAACGAAGGTTCGACAGATTACTGGTTCTCGCTACTGGTTGAGTTCGAGGATGGCGATGGAGATATTGGGTCAATGCACATAAGAGAAGCAAGCTCTGGTATATGGTTGGAGATGAATCATCTATGGGGTGCGAATTGGTGTATTATCGGAGGGCCTCTGAAAGGGCCATTTTCGGTGAAACTTAAGACATTGTCAACGGCCAGAATTCTATCAGCCAGAGACGTGATTCCAAGCAACTGGTCGCCTAAAGCCACTTATCCCTCTCGCTTGAAATTCATCTCCCAAGGAGAAAGAATATTCCATTAA 834 52.04 MARILERLSFGLWIATVSLLLSENRLVQSTHLKHNVASEHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLRARVGAVSPVLFKNGEGCGACFKVKCLDQTICTRRAVTIIVTDECPGGYCAGGRTHFDLSGAAFGRMAVSGESGHLRNRGEIPVIYKRWTQCKYPGKNIAFHVNEGSTDYWFSLLVEFEDGDGDIGSMHIREASSGIWLEMNHLWGANWCIIGGPLKGPFSVKLKTLSTARILSARDVIPSNWSPKATYPSRLKFISQGERIFH 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14795123 14796605 + Bda012811.1 Bda15g00903 22598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00903 277 Pfam Expansin C-terminal domain 172 253 IPR007117 -
Bda15g00903 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 264 IPR007117 -
Bda15g00903 277 PANTHER EXPANSIN-B3 29 269 - -
Bda15g00903 277 SMART dpbb_1 77 159 IPR007112 -
Bda15g00903 277 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Bda15g00903 277 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Bda15g00903 277 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Bda15g00903 277 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Bda15g00903 277 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Bda15g00903 277 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Bda15g00903 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 170 IPR007112 -
Bda15g00903 277 Pfam Lytic transglycolase 79 158 IPR009009 -
Bda15g00903 277 Gene3D - 166 265 IPR036749 -
Bda15g00903 277 PANTHER EXPANSIN-LIKE PROTEIN B1 29 269 - -
Bda15g00903 277 SUPERFAMILY PHL pollen allergen 170 263 IPR036749 -
Bda15g00903 277 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Bda15g00903 277 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Bda15g00903 277 PRINTS Major pollen allergen Lol pI signature 240 257 IPR005795 GO:0005576|GO:0019953
Bda15g00903 277 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Bda15g00903 277 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Bda15g00903 277 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Bda15g00903 277 Gene3D - 25 165 IPR036908 -
Bda15g00903 277 SUPERFAMILY Barwin-like endoglucanases 34 169 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00903 Bda-Chr15:14795123 Bda06g00062 Bda-Chr6:645092 2.29E-35 dispersed
Bda15g00903 Bda-Chr15:14795123 Bda15g00905 Bda-Chr15:14858691 0 proximal
Bda14g00750 Bda-Chr14:5727761 Bda15g00903 Bda-Chr15:14795123 1.31E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00903 K20628 - csv:101202998 432.95