Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00925 ACAAAGCAAATTCTGGACCACAACGTTGAATATGCAAAGCCAAAGGCCCGGATGGAGATGAAGAGCGCAGTAGGAGAGATTGTTGAAGTCGATGGTGGTCATATCGTCCGTTCCACTGGCCGAAAAGACCGACACAGCAAGGTCTTCACAGCGAAAGGCCCTCGCGACCGTCGTGTCCGGCTTTCAGCCCACACCGCAATTCAGTTCTACGACGTTCAAGATCGCCTAGGCTATGATCGACCCAGCAAAGCGGTCGATTGGCTTATAAAAAAGGCAAAGTCCGCTATTGACAAGCTCACAGAGTTACCGCCTTGCTATGCCACCGCCATCGCTGCAGATGCTGACACGAATAATGGCGGTAACGAGATGGTGATTTCTGCAGATCAATCGGAGTCATCCGGATACAATTTGCACCTTCAAAGACATTTGGATGAGAATCCAGATAATAATAATTCGGGTTTCGTTCCTCCGCTGTCTTCAGTTGCCCTAACAGACAGTATGAAAACCTTCTTCCCCACAAGCTCTGGGGCGTCCCCCATCAATTTCCAGACCTTCCCACCAGATATACTTTCACGAGCCGCAAACCCCATTCAAGATCTTGGCCTTTCTCTCCATACTTTTCAAGATCCTGGTCTGATTCACTCTCAGGGAGAGCCAAACCACTCGCCACAGACCGATCAAAACCTTTTCTCTGGCTCGCATCAGGTAGGGTTTGAACCGAGTTACCAGAGAATGGCAGCTTGGGGAAATGATAGAGGCGCTGAACATGGAGGTGGGTTTGTTTTCAGCTCGCTGCCAATTTTCGGCCAGGGTGGCTCGGCTGCATTATCACAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCTGCGTCATTTCGTGGGTGGAACGATCTTTCAATTGCTGCATCCAAAGACCAGAAGACTCATTCACTTCACCAATCTTCGTTATTTGGCACTCGTTTCGTTTCTGATGGGCTACATGGCTTTTGCATTCCCGGACAGAGTCCGGCCGACGATGACAGCGGTATGGTTTCCGAACGATTGTCATCTTCTTCTATGAACTCCCACCGTTGA 1074 50.0 TKQILDHNVEYAKPKARMEMKSAVGEIVEVDGGHIVRSTGRKDRHSKVFTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLTELPPCYATAIAADADTNNGGNEMVISADQSESSGYNLHLQRHLDENPDNNNSGFVPPLSSVALTDSMKTFFPTSSGASPINFQTFPPDILSRAANPIQDLGLSLHTFQDPGLIHSQGEPNHSPQTDQNLFSGSHQVGFEPSYQRMAAWGNDRGAEHGGGFVFSSLPIFGQGGSAALSQRGPLQSSYSPSASFRGWNDLSIAASKDQKTHSLHQSSLFGTRFVSDGLHGFCIPGQSPADDDSGMVSERLSSSSMNSHR 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16069852 16070925 + Bda012848.1 Bda15g00925 22620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00925 357 MobiDBLite consensus disorder prediction 332 357 - -
Bda15g00925 357 PANTHER TRANSCRIPTION FACTOR TCP4 12 118 - -
Bda15g00925 357 Pfam TCP family transcription factor 40 132 IPR017887 -
Bda15g00925 357 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 118 IPR005333 GO:0003700
Bda15g00925 357 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 126 356 IPR005333 GO:0003700
Bda15g00925 357 PANTHER TRANSCRIPTION FACTOR TCP4 126 356 - -
Bda15g00925 357 ProSiteProfiles TCP domain profile. 41 99 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00925 - - - qsu:112040076 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g01404 Bda-Chr14:17469804 Bda15g00925 Bda-Chr15:16069852 0 dispersed
Bda15g00925 Bda-Chr15:16069852 Bda09g00872 Bda-Chr9:22314434 2.56E-24 dispersed
Bda15g00925 Bda-Chr15:16069852 Bda15g00870 Bda-Chr15:14028472 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g203 . . . . Bpe12g00269 . . Bma08g00546 . . Cma02g00071 . Car02g00060 . . . . . . . . . . . . . . . . . . . . . . Lsi10g01578 . . . . Blo13g00343 . Bda15g00925 . . . Bma12g00712 Sed01g0139 Cmo02g00070 . . . . . . Cpe05g01523 Bhi10g01073 Tan05g0714 Cmetu11g1077 . Hepe08g0578 . . . . . . . . . Lsi11g01684 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00079 . 35 261 TCP Transcription Factor Family AT5G23280 53.2 1.3e-52 203.4
Bda14g00462 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda14g00488 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda15g00075 . 35 260 TCP Transcription Factor Family AT5G23280 53.0 2.3e-52 202.6
Bda14g00846 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 80.8 3.0e-40 163.3
Bda12g00454 . 1 287 TCP Transcription Factor Family AT3G27010 53.4 1.2e-66 250.4
Bda07g01383 . 7 243 TCP Transcription Factor Family AT3G27010 57.9 4.5e-58 221.9
Bda14g00462 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda14g00488 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda15g00079 . 35 259 TCP Transcription Factor Family AT5G08330 54.1 5.1e-54 208.0
Bda15g00075 . 35 258 TCP Transcription Factor Family AT5G08330 53.3 7.4e-53 204.1
Bda12g00823 BCT 18 223 TCP Transcription Factor Family AT1G53230 52.1 2.4e-45 179.9
Bda09g00513 . 18 272 TCP Transcription Factor Family AT3G15030 50.4 1.3e-55 214.2
Bda14g00885 BCT 31 173 TCP Transcription Factor Family AT5G60970 57.6 3.7e-40 162.5
Bda14g01404 . 23 209 TCP Transcription Factor Family AT2G31070 54.0 4.7e-43 172.2
Bda15g00870 . 8 192 TCP Transcription Factor Family AT2G31070 53.5 2.2e-40 163.3
Bda15g00925 . 25 208 TCP Transcription Factor Family AT2G31070 53.3 2.9e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17221 PF03634 TCP 1.20E-31 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00925 Bda_Chr15 FPKM 6.129386 6.45963 3.921487 3.101104 13.54286 7.459863 10.299786 7.096028 6.834645