Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00953 ATGGCCAAAGGAAGTGGAGTCTCCTTTGATTCATCAGACCCATTTGTCTTCTTCCCCCACGAACCTACTGTTCTCAACTCATTCTCAGAACGTCACTGTATCAAAAACTTCGATCCCCCCGACTGCAGAGAACTCCTTTCAATTGATTCCACCCGTTCATCCTCTCCTTCTCCCACCATGAACTTCCCTCCCCCGTCTTCCGACGATAAACGGATGATCGTGGACGAGATGAACTTCTTCGCCGATGACAAACACCCTGATTCCTCCATTGACGCCGACGATAATAAACGCTCAGATATCCGGCGCACAAAGTTGGAGGTCAACGTTAACACTGGTTTGCATCTTCTAACCACTAATACCAGTAGCGATCAATCCATGGTGGACGACGGGGTATCTCCTGTCGCAGAAGATAAGAGATCTAAAAGTGAGTTGGTAGTAGTTTTGCAAGCTGAGGTAGAGAGGATGAACATGGAGAATCGACGTTTAAGAGATATGCTCAATAAAGTAAGCAGCAATTACCAGGCGTTGCAGATGCACTTAGTCAATTTAATGCAGGATAAAAAAACTGAGGAAATTGATAAACGCAGTGGAAATGTCGGAACACTGGTTCCGAGGCAATTCATGGATCTTGGTCTGGCTACTAATGCCGATGCCGATGAGCCGTCTCTGTCCTCATCAGAAGCGAATGACTGCCGGTCAGGATCACTGAGAAATAACGTAGAATTTGCATCGGAGGGTGCAGCGATCGAGAGAGAGAGAGAGAAGGAGGAGAATAGTCCTAATCCAGTTTCTCAAGAACAGGGAGGAAGCAAGATTTCGAGATTTCATCCTGGTAAAGACGTTGATCAAACTGACGCAACCATGAGAAAGGCTCGAGTTTCTGTTAGAGCTCGAACTGAGGAGCCTATGATCACAGATGGATGTCAATGGAGGAAATACGGGCAGAAAATGGCGAAGGGAAACCCATGTCCTCGAGCTTATTATCGGTGTAGAATGGCCGCCGGCTGTCCGGTTCGAAAACAGGTGCAAAGGTGTGCAGAAGATCGGACGATTTTGACAACAACTTACGAAGGAAATCACAACCATCCATTACCGCCAGCGGCGATGGCGATGGCCTCAACGACATCATCTGCGGCGAGAATGCTACTATCGGGATCGACGTCGAGCGCCGATCATAGTCTGATGAACCCAAGTTTTCTGCCAAAAACTCTCCTCCTAGGCTCCTCAAACATGGCTACAATCTCAGCCTCCGCGCCGTTTCCTACTGTTACGCTAGACCTCACTCAAACACCCATCAACCCTTTACAATTCCAAAGGCCACAAAGCCCATTTCAAATCCCTTTTCCTAACCCATCTCCGAATTCCTCAGCCTCCTTCCTTCCTCAAATCTTAGGCCAGGCGTTGTACAACCAGTCTAAGTTCTCCGGGCTGCAAATGTCGCAAGAGAGCGGGGGCCAGTTGGGTCAGCAAGGCCCGACGGCTGAAACGCTCAGCGCTGCCATTACTGCAGATCCAAACTTCACGGCAGCGCTAGTCGCAGCAATCACATCTGTTATTGAAGGTGCTCAATCAGTCAAAAACAGCGACATGAATAACAGTAACAGTAGTACTAAAATCAGCAGTTCGAGTTTCTCTGGAAATTGA 1644 48.18 MAKGSGVSFDSSDPFVFFPHEPTVLNSFSERHCIKNFDPPDCRELLSIDSTRSSSPSPTMNFPPPSSDDKRMIVDEMNFFADDKHPDSSIDADDNKRSDIRRTKLEVNVNTGLHLLTTNTSSDQSMVDDGVSPVAEDKRSKSELVVVLQAEVERMNMENRRLRDMLNKVSSNYQALQMHLVNLMQDKKTEEIDKRSGNVGTLVPRQFMDLGLATNADADEPSLSSSEANDCRSGSLRNNVEFASEGAAIEREREKEENSPNPVSQEQGGSKISRFHPGKDVDQTDATMRKARVSVRARTEEPMITDGCQWRKYGQKMAKGNPCPRAYYRCRMAAGCPVRKQVQRCAEDRTILTTTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSTSSADHSLMNPSFLPKTLLLGSSNMATISASAPFPTVTLDLTQTPINPLQFQRPQSPFQIPFPNPSPNSSASFLPQILGQALYNQSKFSGLQMSQESGGQLGQQGPTAETLSAAITADPNFTAALVAAITSVIEGAQSVKNSDMNNSNSSTKISSSSFSGN 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17560389 17562402 - Bda012902.1 Bda15g00953 22648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00953 547 MobiDBLite consensus disorder prediction 216 298 - -
Bda15g00953 547 Coils Coil 145 172 - -
Bda15g00953 547 ProSiteProfiles WRKY domain profile. 299 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda15g00953 547 Gene3D WRKY domain 289 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda15g00953 547 SMART WRKY_cls 304 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda15g00953 547 MobiDBLite consensus disorder prediction 46 68 - -
Bda15g00953 547 MobiDBLite consensus disorder prediction 246 260 - -
Bda15g00953 547 MobiDBLite consensus disorder prediction 273 298 - -
Bda15g00953 547 PANTHER OS05G0567200 PROTEIN 57 538 - -
Bda15g00953 547 Pfam WRKY DNA -binding domain 306 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda15g00953 547 SUPERFAMILY WRKY DNA-binding domain 298 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda15g00953 547 MobiDBLite consensus disorder prediction 525 547 - -
Bda15g00953 547 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 57 538 IPR044810 GO:0003700
Bda15g00953 547 MobiDBLite consensus disorder prediction 218 240 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda13g00576 Bda15g00953 CCT
Bda06g00373 Bda15g00953 CCT
Bda13g00576 Bda15g00953 ECH
Bda06g00373 Bda15g00953 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00927 Bda-Chr2:49474415 Bda15g00953 Bda-Chr15:17560389 1.78E-137 dispersed
Bda06g00373 Bda-Chr6:5944010 Bda15g00953 Bda-Chr15:17560389 5.31E-165 dispersed
Bda06g00552 Bda-Chr6:7798195 Bda15g00953 Bda-Chr15:17560389 5.23E-55 dispersed
Bda12g00922 Bda-Chr12:40323364 Bda15g00953 Bda-Chr15:17560389 1.22E-93 dispersed
Bda13g00576 Bda-Chr13:6742948 Bda15g00953 Bda-Chr15:17560389 2.50E-145 dispersed
Bda15g00953 Bda-Chr15:17560389 Bda15g00959 Bda-Chr15:17679033 0 proximal
Bda06g01096 Bda-Chr6:38953946 Bda15g00953 Bda-Chr15:17560389 1.88E-59 transposed
Bda15g00953 Bda-Chr15:17560389 Bda05g00712 Bda-Chr5:55382542 2.19E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17224 PF03106 WRKY 1.40E-23 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00953 - - qsu:112033147 537.724