Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01018 ATGGAGGAAACACTGAGAGAAGCCAGACGCAAGAAGGAAGAAGAAGAAGACGATGAACATGAACAGGCAAAAGCCCAAGTCTGGAACTACGTATTTGGGTTCGCTGAAATGGCGGCGGTGAAGTGCGCCATTGAGTTGGGAGTAGCCGATGCCATTGAAAGAAATGGAGGCACAATGACACTCTCGCAGCTCTCATTGGCAGTCGGAGCCACCGTCTCCTCCTCCCACCTCCACCGCATTATGCGGCTTCTGGTTCACCGCCGCATATTCAAACAGCTTCCCGCCTCTGATTCGTCCGCCGTAACATATGCCCAAACGCCCATTTCTAGTTTGCTGATGAAAACAGGAGAAACCAGCATGGCGCCATTGTTTCGTCTCGAATTCAGCCCCGTCATGCTTGCACCATGGCACCACCTAAGCGCCCGTATTCTTTCTCAAGACCGCACGGCGTTTAAATCGGCTCACGGCGAGGACTTGTGGAGCTACGCGGAGGCGAACCCTGATCATAGTGAGCTGATAAACGAGGCAATGGCTTGTTCAGCGAGGGTTTCGATGCCTGCGGTGGTCGAGGGCTGCGCTGGTTTATTTGATGGGATTAAGTCCGTCGTCGACGTGGGAGGCGGCAATGGAACTGCTCTGCGGGCTTTGGTGAAGGCGTGCCCGGGGATTCGAGGCATCAACTTTGATCTTCCCCACGTCGTGGCCGTTTCGCATGAATCCGAGGGAGTCGAGAACGTCGGAGGCAACATGTTTGAATCTGTGCCTGAGGCCGACGCTGCTTTCCTCATGTGGGTGCTGCATGATTGGGGAGACGAAGAGTGCATAAAAATACTGAAGAAATGCAAGGAAGCAGTTCCGGAAGACAGGGGGAAGGTGATAATCGTGGAAGCGGTGATTGAAGAAGGGGAGGAGAGCAAGCTGTGTGGGGCCAGATTGATGCTTGACTTGGTTATAATGGCGCATACTTCCAATGGCAGGGAGAGGACCCTCAAGGACTGGGCCCATCTCCTTCAACAGGCTGGGTTTAGTCGTTACTCTGTCACTTCCGTTCAAGCTATTCAGTCTGTCATTCAGGCTTTTCCTTGA 1086 53.41 MEETLREARRKKEEEEDDEHEQAKAQVWNYVFGFAEMAAVKCAIELGVADAIERNGGTMTLSQLSLAVGATVSSSHLHRIMRLLVHRRIFKQLPASDSSAVTYAQTPISSLLMKTGETSMAPLFRLEFSPVMLAPWHHLSARILSQDRTAFKSAHGEDLWSYAEANPDHSELINEAMACSARVSMPAVVEGCAGLFDGIKSVVDVGGGNGTALRALVKACPGIRGINFDLPHVVAVSHESEGVENVGGNMFESVPEADAAFLMWVLHDWGDEECIKILKKCKEAVPEDRGKVIIVEAVIEEGEESKLCGARLMLDLVIMAHTSNGRERTLKDWAHLLQQAGFSRYSVTSVQAIQSVIQAFP 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19051991 19053626 + Bda012997.2 Bda15g01018 22713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01018 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 357 IPR029063 -
Bda15g01018 361 MobiDBLite consensus disorder prediction 1 20 - -
Bda15g01018 361 CDD AdoMet_MTases 202 299 - -
Bda15g01018 361 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 13 359 - -
Bda15g01018 361 Gene3D Vaccinia Virus protein VP39 114 361 IPR029063 -
Bda15g01018 361 Pfam Dimerisation domain 39 85 IPR012967 GO:0046983
Bda15g01018 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 361 IPR016461 GO:0008168
Bda15g01018 361 SUPERFAMILY Winged helix DNA-binding domain 17 115 IPR036390 -
Bda15g01018 361 Coils Coil 1 25 - -
Bda15g01018 361 Gene3D - 9 112 IPR036388 -
Bda15g01018 361 PANTHER O-METHYLTRANSFERASE 13 359 IPR016461 GO:0008168
Bda15g01018 361 PIRSF O-mtase 5 361 IPR016461 GO:0008168
Bda15g01018 361 Pfam O-methyltransferase domain 136 343 IPR001077 GO:0008171
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01018 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - tcc:18607475 440.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00746 Bda-Chr14:5705174 Bda15g01018 Bda-Chr15:19051991 3.97E-100 dispersed
Bda14g00747 Bda-Chr14:5708918 Bda15g01018 Bda-Chr15:19051991 8.70E-98 dispersed
Bda15g01018 Bda-Chr15:19051991 Bda05g00145 Bda-Chr5:6234137 9.37E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g01018 Bda_Chr15 FPKM 2.402597 3.467374 2.566449 3.157441 5.535888 3.90073 4.322042 1.912271 0.737188