Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01019 ATGGAGGAACCCGAAGACTGGATCGCAGTGGAGTTGAAGATCGAAAAGCAGGCGAAAATGGCGGACGACGATGCAAGTATTGGATTCCTGGATCTCTTGCCTTCCGCACTGCTAGCCACTATCCTGACCAAGCTCGATGTGGCTTCCATTTGCTCAATTGCTTCTACATGCAGGACCTTCAAATCTTACGCTTCTCAGATCCTTCCCTACCTTCCCGCTTTCCATCTTCTTGAAATTACTCCAACGAAGGAATTGTTGGGTTCTCTGCTGCCACCAAATCCTTACCTTAGGAGCCTAAAGGTTGACTGTGGCCAGCTTGATGATTCAGCTATCCAGATTTTGCTTCGACCTTCTTTGCATGAACTCAGCCTGCATAATTGTGTGGATTTCAGTGGTAAATTACTTTCTGAAATCGGAGGGCGATGCCAGGGTTTGAGGTGTCTTTACTTGGGTTCGGTGGCTGGAAATAGAGGCCGAGCAGTTCACCTCTCTGATTTGGAGGAGTTACTAAAAGGGTGCTCTCAGTTAGAATCACTGATCCTGATGTTTGAGGCTTCATTATTCCTCCGTCGTGACTTTCCTAAAATTTGGGCTTTCGCATCAGAGAAACTAACATCTCTTGAGATTGGGTATATTGCTTCAGTAATGGTGACAGAACTGTTTTGGCAAGAATCGGGAATCAATCAAGTATCCTTTAATGTTTTACCTTCCATATTTCTAAACATTCATAAACTGTGCCTTTCAGTTGACTCTATTTCTGACTCCATGGTTGATAATTTATCTAAAGCTCTGGTCAATTTAACGCATCTGGATCTTCGAGATGCTCCTTTTATAGAACCAAGAGTTTCATTTGATCTCACCAACTCTGGCCTTCTACATATCAATCATTACGGAAAACTAAAGTATCTATCATTGGTCCGAAGCCAGGAGTTTATGATTACATTCTTCAGGAGAGTAAATGATCAAGGGGTCCTCTTTCTGGCTGACAAATGTGCAAAGATTGAAAGCATATGCCTTGGTGGGTTTTGCCGTGTGACAGACACAGGGTTCAAGACGATTTTGCACTCTTGTTCTAATCTGCGCAAACTTAACGTGTCTCATGGAACTCAGTTAACAGATATAGTTTTTCATGACATTTCTGCAACATCCCTATCTTTGATACATATTGGCTTGAGATGGTGCAATCTCTTAACCAATCAATCTGTGATAAATTTGGCGTCGAACAGGGACCTTGAAGTCCTCGACTTGAGAAACTGCAGAAAACTAGGGGATGATTCACTTCAAGCCATCAGCTCGATTTCAAAACTGAAGATACTGCTGTTAGATGGATCTGATATTACTGATAAGGGATTGTTTTGCCTGAGATATGGGGTAATAAACTCACTAGTTTCCTTCTCGGTTAGAGGCTGCAAAAGACTCACCTCTAAGTTCATCTCTCTTCTGTTTGATGGCTCGACAAACTTGAAATTGCGAGAACTGGATCTATCCAATCTTCCTCACCTCTCCGATGCTGCTGTTTTACTATTGGCCAAACAGAGAATTCCAATTGTTGAACTCCGGCTCCGGCAATGCCCACTCATAGGTAACGCTTCAATTATGGCATTGGCCTCGATGCAGGCTGATGGGGACAGATGGTATGGTAGTAGTTTGCAGTTGTTGGATTTGTATAACTGCGGTGGGATTACACCACTTGCCTTCCGGTGGTTTAAGAACCCGTATTTTCCGAAGCTTAGATGGTTGGGTGTGACAGGAAGTGTAAACAGAGATATAGTCGATGCTTTGGCTAGAAGTAGACCCTTTTTGCATGTTTCTTGCCGTGGGGAGGAGCTCGGGCCCTGCCAATGGGACAAGTCAGTTCCGTACATGCACGAGGAGGAGGAGGAGGTGGTGGTGGAAGACCTCGAGCAGTGGGTTTTGGAAGCTGCCCAATATATTGCCGACGAAGAAGAAGACGACGAAGAAGACGGAGACTTGGAAGATGCCGAAACTGATGAAGAACCATTGGAGTAA 2010 44.28 MEEPEDWIAVELKIEKQAKMADDDASIGFLDLLPSALLATILTKLDVASICSIASTCRTFKSYASQILPYLPAFHLLEITPTKELLGSLLPPNPYLRSLKVDCGQLDDSAIQILLRPSLHELSLHNCVDFSGKLLSEIGGRCQGLRCLYLGSVAGNRGRAVHLSDLEELLKGCSQLESLILMFEASLFLRRDFPKIWAFASEKLTSLEIGYIASVMVTELFWQESGINQVSFNVLPSIFLNIHKLCLSVDSISDSMVDNLSKALVNLTHLDLRDAPFIEPRVSFDLTNSGLLHINHYGKLKYLSLVRSQEFMITFFRRVNDQGVLFLADKCAKIESICLGGFCRVTDTGFKTILHSCSNLRKLNVSHGTQLTDIVFHDISATSLSLIHIGLRWCNLLTNQSVINLASNRDLEVLDLRNCRKLGDDSLQAISSISKLKILLLDGSDITDKGLFCLRYGVINSLVSFSVRGCKRLTSKFISLLFDGSTNLKLRELDLSNLPHLSDAAVLLLAKQRIPIVELRLRQCPLIGNASIMALASMQADGDRWYGSSLQLLDLYNCGGITPLAFRWFKNPYFPKLRWLGVTGSVNRDIVDALARSRPFLHVSCRGEELGPCQWDKSVPYMHEEEEEVVVEDLEQWVLEAAQYIADEEEDDEEDGDLEDAETDEEPLE 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19067904 19070961 + Bda012999.1 Bda15g01019 22714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01019 669 Gene3D - 13 75 - -
Bda15g01019 669 SUPERFAMILY F-box domain 19 66 IPR036047 GO:0005515
Bda15g01019 669 PANTHER UNCHARACTERIZED 33 582 - -
Bda15g01019 669 Gene3D Ribonuclease Inhibitor 481 604 IPR032675 -
Bda15g01019 669 Gene3D Ribonuclease Inhibitor 76 480 IPR032675 -
Bda15g01019 669 SMART LRR_CC_2 409 433 IPR006553 -
Bda15g01019 669 SMART LRR_CC_2 357 382 IPR006553 -
Bda15g01019 669 SMART LRR_CC_2 383 408 IPR006553 -
Bda15g01019 669 SMART LRR_CC_2 513 538 IPR006553 -
Bda15g01019 669 SMART LRR_CC_2 547 572 IPR006553 -
Bda15g01019 669 SMART LRR_CC_2 487 512 IPR006553 -
Bda15g01019 669 SMART LRR_CC_2 331 356 IPR006553 -
Bda15g01019 669 SMART LRR_CC_2 116 141 IPR006553 -
Bda15g01019 669 Pfam F-box domain 31 70 IPR001810 GO:0005515
Bda15g01019 669 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 33 582 - -
Bda15g01019 669 SUPERFAMILY RNI-like 85 569 - -
Bda15g01019 669 MobiDBLite consensus disorder prediction 645 669 - -
Bda15g01019 669 Pfam Leucine Rich repeat 407 431 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01019 - - - cit:102611025 860.522
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g01019 Bda-Chr15:19067904 Bda15g00073 Bda-Chr15:2589308 2.32E-14 dispersed
Bda14g00633 Bda-Chr14:4757219 Bda15g01019 Bda-Chr15:19067904 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g01019 Bda_Chr15 FPKM 8.63341 10.816311 7.731462 8.798244 18.921349 17.411076 18.359062 2.666033 2.219712