Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01022 ATGGATTCTGGTCGCATTGAAAGTGCACTCCACCTGTTTGAACGATTGTCTCAATTGGACATTTACATCTGCAATGTCTTGATCAGGGGATTGACGGATCAAGGAATGTTTAATGAAACTATGAATATCTATTACCGGATGAATTTCCAAGGAATTGGCACTGATAAATATACGTACCCTTTTGTAATCAAATCAATTGGTGGGTTGTTATCGTTTGAAGAAGGCCAAAAGGTCCACGCTAAGTTATTTAAAGTTGGGTTGGATTTGGATGTTTACATTTGCAATTCTCTTCTTTTCATGTACGCAAAGCTTGGATTTATAGAGCTCGCAGAGAGGGTATTTCAAGAAATGCCTCTCAAAGACCTGGTTAGTTGGAACTCGATGACGAGTGGCTATGTTTCGGCCATGAATGGTTTGAGTTCGCTTAAGTGCTTTTCCAAAATGCAGAGGGTTGGATTTAAATGTGACAGGTTCAGCTTGATTAATGCCCTTTCTGCTTGTTCTTTCGAGTATTATGAACGAAGTGGAAAGGAGATTCACTGTCAAGCGTTTAGAACGGGGTTTGAAGAAGACGTTATGGTTCAAACGACTCTTGTCGATATGTATGCGAAATGTTGCAGAATCGATTATGCGGAGAGGGTATTCGAAAGAATTTCTCGAAGAAGTGTCGCCACTTGGAATGCAATGATTGGAGGGTATGGATCGAATAATTGCATCTCATCATCATTAGCTTGCTTAAAAAGTATTCAAGAAACTGACAGATTGAAACCGGACGGGATTACGATGATAAATATTCTTCCTTCTTTCGCACAGGTTGGAACTCTTTTGGAAGGAAAAGCTATTCATGGGTATTCAATTCGAGCACTTCTTACAATGTATGGAGAGTGTGGTAAATTGAATTCAGCAGTGGATCTGTTCGATCAAATGGCCGAGAAAAATCTTGCATCGCGGAATTCTTTAGTAGCTGCTTATGTACAGCATGGCCAGAGCTGGGAAGCCTTAGAGTTCTTCGAAAATCTCGTGACTAAACCTCTTGAAATCGATGCAGTAACAATTGCAAGCATCTTACCTGCCTATGCTGAATTAGGATCATTGAGGAAGGGGATAGAAATTCATGGGTATATTGTGAAATTGAAGTACTACTCGAATACTTTTGTCTCGAATTCTATGATCTACATGTACGCTAAATGTGGAGATTTATTCTCCGCGCAGAGGATTTTCGATAATATGTCATTTAAGGATGTTATATCATGGAACACAATCATTATGGCTTATGGAATTCACGGGTTCGGGGCTAAGTCGATCAAACTATTCGAGGAGATGAAGAAAATGGGCATCGAACCCAATGAAAGCACCTTTGTTTCGCTACTTTCGTCATGTGCCATTTCTGGTTTGGATGATATGGGCTGGAAGTTCTTCAATTCGATGAAAAATGACTATAAAATAAGTCCTGGAATAGAACACTACGGCTGTATGGTAGATCTCATTGGCCGGAGCGGTGACTTTGGCGGAGCCAAGGCGTTTATCGAAGAAATGCCGATAGCCCCTACAGCTCGGATATGGGGATCATTACTTACGGCTAGCAGAAACCATAAAAACATCGAATTTGCTGAATCTTCGGCCGAGAAGATTCTGTCCTTTGGCCATGATAATACTGGATGTTATATCTTGCTGGCTAATATGTATGCTGAAGCAGGAAGATGGGAAGATGTGAAAAGAATCAAAACTCTTATGAACAAACAAGGATTGCAGAAAACAGTTGGATTCAGCGCGGTTGAGATCAAATCCAAGTCTCACAGATTTTTCAACCTCGATCGATCTCATGGAGATTCAAACATGATTTACGATGTTCTCGACATACTTTTGCGAAAAACAGAGGACAAGTTTGTTCATAATTTGGCCAAGTTTAGAATAGTAGTGTTGGATAAACATAAATCGAACAGTCCCGAGACACACAGCGTGAGATTGGCGATATGCTACGGGCTGATCTCCTCGGAGATTGGAAAACCCGTGATTGTCAAGAAGAACACGAGAATATGCGAGGATTGCCACGTCGCTTGTAAGAAGATTTCGACGGTCACGAAAAGGGAGATCATTGTAAGGGATTTTAAGGTTTTTTCCCACTTCAAATATGGGAGTTGCTCCTGTGGAGATTATTGGCGATGA 2166 40.86 MDSGRIESALHLFERLSQLDIYICNVLIRGLTDQGMFNETMNIYYRMNFQGIGTDKYTYPFVIKSIGGLLSFEEGQKVHAKLFKVGLDLDVYICNSLLFMYAKLGFIELAERVFQEMPLKDLVSWNSMTSGYVSAMNGLSSLKCFSKMQRVGFKCDRFSLINALSACSFEYYERSGKEIHCQAFRTGFEEDVMVQTTLVDMYAKCCRIDYAERVFERISRRSVATWNAMIGGYGSNNCISSSLACLKSIQETDRLKPDGITMINILPSFAQVGTLLEGKAIHGYSIRALLTMYGECGKLNSAVDLFDQMAEKNLASRNSLVAAYVQHGQSWEALEFFENLVTKPLEIDAVTIASILPAYAELGSLRKGIEIHGYIVKLKYYSNTFVSNSMIYMYAKCGDLFSAQRIFDNMSFKDVISWNTIIMAYGIHGFGAKSIKLFEEMKKMGIEPNESTFVSLLSSCAISGLDDMGWKFFNSMKNDYKISPGIEHYGCMVDLIGRSGDFGGAKAFIEEMPIAPTARIWGSLLTASRNHKNIEFAESSAEKILSFGHDNTGCYILLANMYAEAGRWEDVKRIKTLMNKQGLQKTVGFSAVEIKSKSHRFFNLDRSHGDSNMIYDVLDILLRKTEDKFVHNLAKFRIVVLDKHKSNSPETHSVRLAICYGLISSEIGKPVIVKKNTRICEDCHVACKKISTVTKREIIVRDFKVFSHFKYGSCSCGDYWR 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19188871 19191070 + Bda013004.1 Bda15g01022 22717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01022 721 Pfam E motif 531 593 IPR046848 -
Bda15g01022 721 Pfam DYW family of nucleic acid deaminases 640 720 IPR032867 GO:0008270
Bda15g01022 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Bda15g01022 721 PANTHER BNAANNG11600D PROTEIN 15 714 - -
Bda15g01022 721 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 714 - -
Bda15g01022 721 Gene3D Tetratricopeptide repeat domain 1 70 IPR011990 GO:0005515
Bda15g01022 721 Gene3D Tetratricopeptide repeat domain 179 279 IPR011990 GO:0005515
Bda15g01022 721 Gene3D Tetratricopeptide repeat domain 71 178 IPR011990 GO:0005515
Bda15g01022 721 Gene3D Tetratricopeptide repeat domain 281 377 IPR011990 GO:0005515
Bda15g01022 721 TIGRFAM PPR: pentatricopeptide repeat domain 416 450 IPR002885 -
Bda15g01022 721 TIGRFAM PPR: pentatricopeptide repeat domain 92 120 IPR002885 -
Bda15g01022 721 Gene3D Tetratricopeptide repeat domain 432 588 IPR011990 GO:0005515
Bda15g01022 721 Pfam PPR repeat family 413 461 IPR002885 -
Bda15g01022 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Bda15g01022 721 Pfam PPR repeat 123 153 IPR002885 -
Bda15g01022 721 Pfam PPR repeat 288 313 IPR002885 -
Bda15g01022 721 Pfam PPR repeat 318 340 IPR002885 -
Bda15g01022 721 Pfam PPR repeat 196 221 IPR002885 -
Bda15g01022 721 Pfam PPR repeat 388 411 IPR002885 -
Bda15g01022 721 Pfam PPR repeat 225 250 IPR002885 -
Bda15g01022 721 Pfam PPR repeat 93 119 IPR002885 -
Bda15g01022 721 Pfam PPR repeat 23 51 IPR002885 -
Bda15g01022 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 20 54 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01022 - - - qsu:111992053 937.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g01022 Bda-Chr15:19188871 Bda15g00115 Bda-Chr15:3527971 3.94E-20 dispersed
Bda15g01022 Bda-Chr15:19188871 Bda08g00065 Bda-Chr8:527492 3.36E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g208 . . . . . Bpe12g00131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00495 Bda15g01022 . . . . Bma08g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017223 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g01022 Bda_Chr15 FPKM 45.660358 51.855724 25.296581 28.963455 24.986776 25.895454 24.509628 30.356016 25.43989