Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01028 ATGACGCAAGATGTTGAGATGAAGGAAACTGAAGCTCCTTCAAATTCTGCTTCCTCCGCTTCTCTTTCAACTTTACAACATTTGAAAGAGATTGCATCACTCATCGAGACTGGTGCCTATGCTCGGGAAGTTCGCAGAATTGTGCGAGCTGTACGGCTTACTATGGTATTGAGGCGGAAGTTAAAGGTGCCTGTGCTCTCTGCCTTCCTTGCTTTTGCCCTAACTCCGGGGTCCGAAGTGCACACTAGGCTTTCTTCCTATCTTCCAAAGGAAGATGAGCAAGACATGGATGTTGATACCGCAACATCTGCAACTCATGTTTCTGCAAAGCACCCTTTACCGGAGCTTGAGATATACTCCTACTTGGTTGTGTTAATATTTTTGATTGATCAGAACAGGTATAATGAGGCCCAGTCTTGTGCTTCAGCAAGTATTGTTCGACTGAAGAACATGAACAGGAGAACCGTTGATGTGTTAGCATCCAGGCTCTATTTCTACTATTCACTTAGCTATGAGCTCACTGGTGATCTTGCAGAAATAAGGGGTAACCTCCTTGCCCTGCATCGAATTGCAACTTTGCGCCATGATGAGTTGGGCCAGGAAACTCTTCTAAACCTACTTCTGCGCAATTATCTGCATTACAATCTATACGATCAGGCTGAGAAGCTAAGATCCAAGGCTCCTCGTTTTGAAGCTCACTCAAATCAACAGTTCTGCCGATATCTGTTTTATTTGGGAAAGATTCGGACAATTCAACTGGAGTATACAGATGCGAAAGAGTCCCTTCTGCAGGCTGCCCGGAAAGCCCCTGCTTCAGCCCTTGGATTCCGAGTTCAATGCAACAAATGGGCCATCATTGTTCGCCTACTGCTTGGAGAAATCCCTGAGAGAACAGTTTTCATGCAGAAACACATGGAGAAGGCTTTGAAGCCATATTTTGAACTTACAAATGCTGTGAGAATTGGTGATCTGGAGCTTTTTAGAACTGTTGCTGACAAGTTCTCGAGTACTTTCACTTCAGATCGTACCAATAATCTAATTGTTAGGCTGCGACATAATGTCATTAGGACTGGTCTCCGCAACATAAGCATTTCTTATTCCCGTATCTCATTAGCTGATGTTGCGAAAAAATTGCGATTGGACTCTGCAAATCCAGTTTCTGATGCCGAAAGTATCGTGGCCAAGGCAATTAGAGATGGAGCAATAGATGCTACACTGGACCATGCCGAAGGATGCATGGTATCAAAGGAGACTGGGGACATCTACTCCACAAATGAGCCTCAAGCTGCTTTCAACTTGAGAATTGCATTTTGCCTCAATATGCACAACGAGGCAGTGAGAGCTCTTTGCTTTCCACCAAACTCCCACAAAGAGAAGGAAAGTGCAGAGAAAAGGAGGGAGAGGCAGCAGCAGGAGCAAGAGCTTGCAAAGCACATAGCTGAGGAGGATGATGATGATTTTTGA 1464 44.81 MTQDVEMKETEAPSNSASSASLSTLQHLKEIASLIETGAYAREVRRIVRAVRLTMVLRRKLKVPVLSAFLAFALTPGSEVHTRLSSYLPKEDEQDMDVDTATSATHVSAKHPLPELEIYSYLVVLIFLIDQNRYNEAQSCASASIVRLKNMNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPASALGFRVQCNKWAIIVRLLLGEIPERTVFMQKHMEKALKPYFELTNAVRIGDLELFRTVADKFSSTFTSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVSDAESIVAKAIRDGAIDATLDHAEGCMVSKETGDIYSTNEPQAAFNLRIAFCLNMHNEAVRALCFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19241049 19244081 + Bda013010.1 Bda15g01028 22723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01028 487 SMART PINT_4 345 438 IPR000717 -
Bda15g01028 487 Gene3D - 243 432 - -
Bda15g01028 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Bda15g01028 487 Coils Coil 454 481 - -
Bda15g01028 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Bda15g01028 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Bda15g01028 487 MobiDBLite consensus disorder prediction 452 487 - -
Bda15g01028 487 SUPERFAMILY Winged helix DNA-binding domain 347 421 IPR036390 -
Bda15g01028 487 MobiDBLite consensus disorder prediction 1 21 - -
Bda15g01028 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Bda15g01028 487 Pfam PCI domain 311 416 IPR000717 -
Bda15g01028 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 1 487 - -
Bda15g01028 487 MobiDBLite consensus disorder prediction 453 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01028 K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3 - cpap:110818950 802.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01403 Bda-Chr7:16898997 Bda15g01028 Bda-Chr15:19241049 4.92E-06 dispersed
Bda15g00198 Bda-Chr15:4551474 Bda15g01028 Bda-Chr15:19241049 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g179 . . . . . Bpe12g00127 . . Cmo19g00757 Cmo11g01750 . . . . . Cpe04g00602 Cpe15g00601 Bhi05g01695 Tan02g0667 . . Hepe02g0415 . . Cla02g00415 Cam02g0425 Cec02g0423 Cco02g0441 Clacu02g0426 Cmu02g0421 Cre02g0755 . . . . . Csa07g00112 . Cme01g01250 . Blo13g00498 Bda15g01028 . . . . Bma08g00613 . . . Cma11g01368 . . Car19g00576 . . . . . . . . . . . . . . . . . . Chy01g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g01028 Bda_Chr15 FPKM 16.557274 18.260763 18.464422 17.2416 21.87698 21.953466 23.124268 87.560669 93.341553