Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01035 ATGGAAACACGGAGCCGTAAGCGGGCGGAGGCTACCTCAGCAGCCCCTTCTTCTTCTTCGTCTGTTCCAACTACCCGTTCAAACAAACGGTCTCGTCTTTCTGCTACTTCGTCCCCACATTCCAAACAATCTTCCCCAGCTGCTTCATCAATTTCAACTAGGTCCCGTACTTCGAGATTTCAAGAACCAACTGCTACTGCTACTCCAATGGACTCGACTAATGAATCATCTGGGTCTCGTCGTCGTGGGAGAAACTCAGATAAGGATAATTCGGATAAGGGCAAGGAGAAAGAGCATGAAGTTGGAGTTAGAGATAGAGAAAGGGATATTGAGCGAAGCTTAGGATTGAATATTGAAGGTGGTGCTGGTGGAGACGATGATGATAACGACAGTGAGGTTGGAATTTTGCACCAGAATTTGACTTCAGCAAGTAGTGCCCTTCAAGGGCTTCTTAGGAAGTTGGGGGCGGGTTTAGATGACTTGTTGCCTTCCTCCGCTATTGGGTCTGCATCAAGTTCCCAACAGAGCGGCCGGCTCAAGAAGATCCTTGCGGGGTTGAGAGCAGATGGGGAAGAAGGTAGGCAGGTGGAGGCACTGACACAACTTTGTGAGATGCTTTCTATTGGGACCGAGGAATCACTGAGTACATTTTCTGTTGATTCTTTTGTTCCTGTCCTGGTTGGGTTGCTTAATCACGAGAGCAATCCTGATATCATGCTTCTGGCCGCCAGGGCAATAACTCATCTTTGTGACGTGCTTCCTTCATCTTGTGCTGCGGTTGTGCATTATGGTGCAGTTTCATGCTTCTGTGCTAGGTTGTTGACAATAGAGTACATGGACTTGGCTGAACAGTCATTGCAGGCTCTAAAGAAGATATCGCAGGAACACCCAACTGCCTGTCTGCGAGCTGGTGCTCTAATGGCTGTGCTTTCTTATCTGGATTTCTTCTCCACAGGAGTTCAGAGAGTAGCATTATCTACTGCTGCAAACATGTGTAAAAAGCTTTCTTCAGATGCAGCTGACTTTGTTATGGAAGCTGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGGATTGCCGAAGCATTTGCATCATCTCCTGATAAATTAGATGAATTGTGTAATCATGGACTAGTGGCTCAAGCTGCCTCACTTATATCTGCCAGCAATTCTGGAGGTGGTCAGGCATCGCTCAGCATACCTACTTATACGGGATTAATTAGACTTCTTTCCACCTGTGCAAGTGGGTCCCCATTAGGGACTAAAACGCTTCTTCTTCTTGGCATCAGTGGTATTCTCAAAGATATTCTTTCTGGTTCTGGCACAGCTGCAAATGCATCTGTTTCACCTGCTTTAAGTAGACCGCCAGAGCAGATTTTTGAAATTGTCAATCTAGCAAATGAGCTTCTACCACCACTACCCCAAGGAACCATATCCCTTCCTGCCAGTTTTTTGTTTGTGAAAGGATCTGCTATGAAAAAGTCTTCTGCTAGTGGTTCCGGAAAACAAGAAGAAGCAAATTGTTCAAATCCTGAGGTCTCAGCTCGTGAGAGACTCTTAAATGATCAACCTGAGCTTCTTCAGCAATTTGGAATGGATCTTCTTCCAATTTTAATACAGATCTACGGGTCAAGTGTTAATGGTCCTGTTCGCCACAAATGTCTCTCCATTATTGGGAAATTGATGTACTTCAGTTCTTCAGAGATGATCCACTCTCTATTAAATGTAGCAAATATATCAAGTTTCTTAGCCGGTGTCTTAGCATGGAAAGATCCTCATGTCTTGATACCTGCTCTTCAAATTGCTGAAATTCTTATGGAAAAGCTTCCAGAAATTTTTGCAAAGATGTTTGTTAGAGAAGGCGTGGTCCATGCAGTGGACCAACTTGTTTTAGTTAATAACCAAAATAATACTCCTACCCAAGCGTCCTCGACCGAGAAAGAAACTGATCCTGGAACTGGAACATCATCTCGTACTCGGCGTTACAGGCGTCGTAACAGTAATGCAAATCCAGATGTAAGTACATTGGATGAGTCTAAGAATAGTTCTGCAAATGTTGGTTCACCTCCAAGCTCAGTAGAAGTTCCTTCCATTAATTCCAATATTCGGTTGGCGGTTAGTGGTTGTGCTATCGCATTCAAGGACAAGTACTTCCCTTCAGATCCTGGAGCTACCGAAGTTGGAGGAACTGATGATCTTTTGCATTTGAAGAATCTTTGCAGGAAGCTGAATTTAGGTATTGATGACCAACGTGCAAAAGCAACGGGGAAGTCAAAAGCCTCTGAGTCTCACTTGGTTGATAACTCTGCGAATAAGGAAGAATACCTATCTCGTGTTATATCAGAGATGCTAGTTGAATTTGGCAAAGGGGACGGTGTATCCACTTTTGAGTTTATTGGAAGTGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGTGGATACTTTTTGAAGGAGAAAATTTCAGATGCTAATCTGCCAAAGCTTCGTCAGCAGGCACTTAAAAGATTCAAATCATTTGTTGCTGTAGCACTTCCTTCCAATGCTTCTGAGGGTACTTTGGCTCCTATGGCTGTTTTAGTTCAGAAACTTCAAAATGCTTTATCTTCCTTGGAGCGTTTCCCGGTTGTCTTAAGGCAGTCATCTAGGTCATCTAGTGGAAGTGGTCGTCTTTCCTCTGGATTAAGTGCATTATCTCAGCCTTTTAAGTTGCGTCTCTGTCGAGCTCACGGAGAGAAAAATCTCCGTGATTATTCTTCAAATGTTGTGCTCATTGATCCCTTAGCAAGTTTGGCAGCAGTTGAAGAGTTTCTTTGGCCTCGAGTACAGCGAGGTGATGCTGGTCAAGAGTCTGCATTATCTACTGGAAATTCAGAGTTGGGGACCACTTCTGCTGTGGCTGGGGCTTCATCTCCATCCACAACCGCTCCTGCTTCAACAACTCGTCGTCACTCTACTAGGTCTAGATCCTCAGTGAACATAGGAGATGGAGCTAAGAAGGAATTATCTGAAGAGAAAAGCACAAGTTCATCTAAAGGAAAAGGTAAGGCTGTTATGAAGCCTGCTCAGGAGGAAGCAAGAGGGCCTCAAACTAGGAATTCTTCTCGTAGAAAAGCAGATATAGACAAGGATGCTCTGAAACCTGTTAATGGGGAGACTTCGTCTGAGGATGAGGAATTGGATGCATCTTTTGTTGAGATTGATGATGCATTAGTTATTGAAGATGATGATATCTCAGACGACGAAGAAGATGATGATCATGATGAGGTCCTAAGAGCTGAGTCCCTTCCCGTTTGTATACCTGAAAGAGTACATGACGTGAAGTTGGGGGATGCAGCCGAGGAAAGTAATGTTGCTCCAGTAACTGCAGATAGCCAGGTCAATCCTGCTTCCGGTTCAAGTAGCAGAATTGCTGTAGTTAGGGGCTCAGATTCTAATGATCATAGGAGTAGCAACTCTTATGGTTCAAGGGGTGCAATGTCATTTGCCGCTGCTGCTATGGCTGGGCTTCGATCTGCTAATGGTAGAGGTTTTAGAGGAGGTCGAGACAGGCATGGTCGTCCTCTCTTTGGTAGCTCTAGTGATCCACCAAAGTTGGTCTTTACTTCTGGTGGGAAGCAACTTAATAGGCATTTAACCATTTACCAGGCTATCCAGAGACAACTTGTTTTGGATGAGGATGACGATGAGAGATATGCTGGTAGTGATTTCTTGTCTAGTGATGGAAGTAGGCTATGGAGTGACATATATACTATTACATACCATAGAGCTGAAAATCAAGCTGATAGAACGTCTACTGGGGGATCCAATGCTTCTGCCGCGTCAAGATCTACCAAATCTGGATCTGCTTCCAATTCTAACTCTAATTTGCAGAGGGTGTCTCTTCTGGATAGCATTTTGCAAGCGGAGCTTCCTTGTGATATGGAAAAGTCTAATCCTACTCATAGTATTTTGGCATTGTTGCGTGTTTTAGACACTTTGAACCAACTTGCACCCCGTTTGAGAGCGCAGATAGTTTCTGATCGTTTTGCAGAGGGTAAACTCGTCAGTCTTGATGAGCTAAGTGCTGCTGGTGCAAGGGTCCTTCCTGAGGAGTTCATTAATAGCAAGCTTACTCCTAAATTAGCTCGACAAATTCAAGATGTCCTTGCATTATGCAGCGGAAGTCTCCCTTCATGGTGTTATCAGTTGACCAAAGCTTGTCCATTCTTGTTTCCTTTTGAAACCCGGCGACAGTATTTCTATTCAACTGCTTTTGGGTTATCACGTGCATTGTACCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCTTGGAATGGGAAGTGAAAGAGAGGTGAGGGTTGGAAGGTTACAGCGCCAAAAAGTTCGTGTATCTAGAAACCGTATTTTAGACTCTGCGGTGCAAGTAATGGAAATGTATTCTAGTCAAAAGGTAATGCTGGAAGTAGAGTATTTTGGTGAAGTTGGAACTGGGTTGGGTCCTACGCTTGAGTTTTATACACTTATAAGTCATGACCTACAAAAGGCTAGTCTTGGAATGTGGAGATCAAATTCCTCATCTGATAGATCTATGGAAATTGATGGGGATGAACTGAAAGATGAAAAAATTAACTCTGCTGGATTTGGTTCTACGGTAAGCAATTCAGACTCCATACATGCTCCACTTGGATTGTTCCCTCGCCCCTGGTCTCCAAATTCTGATGTTTCAAATGGTAGCCAATTTTCTAAAGTAATAGAGTATTTCCGATTAGTTGGTCGTGTGATGGCCAAAGCACTTCAGGATGGGCGATTATTGGACCTACCACTGTCAACAGCATTCTATAAGCTGGTGCTTGGTCAAGAGCTCGATTTGCATGATATTCTTTCCTTTGATACTGAATTTGGCAAGATTTTGCGAGAGTTGCATGTACTTGTTTGTCGGAAACAATACCTAGAATCAACAGGTAGTGATAATCATGAAGCAATCGTCAACTTGCATTTTCGTGGGACTTCAATTGAGGACCTGTACTTGGATTTTTCGCTTCCTGGTTACCCAGATTACATTTTGAAGCAGGGAGATGAAAATGTCAATATCAACAACCTGGAGGAGTACGTGTCCTTGGTAGTTGATGCAACTGTCAAGACTGGAATCATGCGACAAATTGAAGCATTTAGAGAAGGGTTTAACCAGGTCTTTGACATCACTTCGTTGCAAGTATTTACTCCAAATGAGCTAGATCATTTGCTTTGTGGTCGGCGAGAGTTATGGGAGGCTGACACCCTTGCTGATCACATAAAATTTGATCATGGCTACACTGCAAAGAGCCCTGCCATAGTAAATTTACTCGAGATCATGGGAGAGTTCACTCCTGAGCAGCAGCGAGCCTTTTGCCAGTTTGTTACTGGTGCACCTCGGCTTCCTCCTGGTGGGTTGGCTGTTCTGAACCCAAAACTTACAATCGTGAGAAAGCATTCTTCAACCGCTACTAATGTTACAACTAATGGAACTGGGTTGTCCGAATCAGCAGATGATGACTTGCCGAGTGTTATGACTTGTGCCAATTACCTGAAGCTTCCTCCTTACTCAACTAAGGAAATTATGTTCAAAAAATTAATCTATGCGATCAGTGAAGGGCAGGGATCTTTTGATCTCTCGTGA 5634 43.81 METRSRKRAEATSAAPSSSSSVPTTRSNKRSRLSATSSPHSKQSSPAASSISTRSRTSRFQEPTATATPMDSTNESSGSRRRGRNSDKDNSDKGKEKEHEVGVRDRERDIERSLGLNIEGGAGGDDDDNDSEVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAIGSASSSQQSGRLKKILAGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARAITHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLSSDAADFVMEAVLEHASVCLTRIAEAFASSPDKLDELCNHGLVAQAASLISASNSGGGQASLSIPTYTGLIRLLSTCASGSPLGTKTLLLLGISGILKDILSGSGTAANASVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPASFLFVKGSAMKKSSASGSGKQEEANCSNPEVSARERLLNDQPELLQQFGMDLLPILIQIYGSSVNGPVRHKCLSIIGKLMYFSSSEMIHSLLNVANISSFLAGVLAWKDPHVLIPALQIAEILMEKLPEIFAKMFVREGVVHAVDQLVLVNNQNNTPTQASSTEKETDPGTGTSSRTRRYRRRNSNANPDVSTLDESKNSSANVGSPPSSVEVPSINSNIRLAVSGCAIAFKDKYFPSDPGATEVGGTDDLLHLKNLCRKLNLGIDDQRAKATGKSKASESHLVDNSANKEEYLSRVISEMLVEFGKGDGVSTFEFIGSGVVAALLNYFSCGYFLKEKISDANLPKLRQQALKRFKSFVAVALPSNASEGTLAPMAVLVQKLQNALSSLERFPVVLRQSSRSSSGSGRLSSGLSALSQPFKLRLCRAHGEKNLRDYSSNVVLIDPLASLAAVEEFLWPRVQRGDAGQESALSTGNSELGTTSAVAGASSPSTTAPASTTRRHSTRSRSSVNIGDGAKKELSEEKSTSSSKGKGKAVMKPAQEEARGPQTRNSSRRKADIDKDALKPVNGETSSEDEELDASFVEIDDALVIEDDDISDDEEDDDHDEVLRAESLPVCIPERVHDVKLGDAAEESNVAPVTADSQVNPASGSSSRIAVVRGSDSNDHRSSNSYGSRGAMSFAAAAMAGLRSANGRGFRGGRDRHGRPLFGSSSDPPKLVFTSGGKQLNRHLTIYQAIQRQLVLDEDDDERYAGSDFLSSDGSRLWSDIYTITYHRAENQADRTSTGGSNASAASRSTKSGSASNSNSNLQRVSLLDSILQAELPCDMEKSNPTHSILALLRVLDTLNQLAPRLRAQIVSDRFAEGKLVSLDELSAAGARVLPEEFINSKLTPKLARQIQDVLALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGLGMGSEREVRVGRLQRQKVRVSRNRILDSAVQVMEMYSSQKVMLEVEYFGEVGTGLGPTLEFYTLISHDLQKASLGMWRSNSSSDRSMEIDGDELKDEKINSAGFGSTVSNSDSIHAPLGLFPRPWSPNSDVSNGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQELDLHDILSFDTEFGKILRELHVLVCRKQYLESTGSDNHEAIVNLHFRGTSIEDLYLDFSLPGYPDYILKQGDENVNINNLEEYVSLVVDATVKTGIMRQIEAFREGFNQVFDITSLQVFTPNELDHLLCGRRELWEADTLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTATNVTTNGTGLSESADDDLPSVMTCANYLKLPPYSTKEIMFKKLIYAISEGQGSFDLS 1877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19333013 19343273 - Bda013020.1 Bda15g01035 22730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01035 1877 MobiDBLite consensus disorder prediction 1260 1287 - -
Bda15g01035 1877 SUPERFAMILY Hect, E3 ligase catalytic domain 1445 1870 IPR035983 GO:0004842
Bda15g01035 1877 SMART hect_3 1465 1877 IPR000569 GO:0004842
Bda15g01035 1877 MobiDBLite consensus disorder prediction 1 133 - -
Bda15g01035 1877 MobiDBLite consensus disorder prediction 77 114 - -
Bda15g01035 1877 Gene3D - 167 473 IPR011989 -
Bda15g01035 1877 MobiDBLite consensus disorder prediction 635 655 - -
Bda15g01035 1877 MobiDBLite consensus disorder prediction 948 992 - -
Bda15g01035 1877 MobiDBLite consensus disorder prediction 667 694 - -
Bda15g01035 1877 ProSiteProfiles HECT domain profile. 1475 1877 IPR000569 GO:0004842
Bda15g01035 1877 MobiDBLite consensus disorder prediction 1118 1155 - -
Bda15g01035 1877 Pfam HECT-domain (ubiquitin-transferase) 1499 1877 IPR000569 GO:0004842
Bda15g01035 1877 CDD HECTc 1452 1872 IPR000569 GO:0004842
Bda15g01035 1877 MobiDBLite consensus disorder prediction 948 1063 - -
Bda15g01035 1877 Gene3D Hect, E3 ligase catalytic domains 1392 1639 - -
Bda15g01035 1877 Gene3D Hect, E3 ligase catalytic domain 1748 1875 - -
Bda15g01035 1877 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 44 1877 - -
Bda15g01035 1877 MobiDBLite consensus disorder prediction 635 694 - -
Bda15g01035 1877 MobiDBLite consensus disorder prediction 1116 1155 - -
Bda15g01035 1877 MobiDBLite consensus disorder prediction 10 76 - -
Bda15g01035 1877 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 44 1877 IPR045322 GO:0006511|GO:0061630
Bda15g01035 1877 SUPERFAMILY ARM repeat 178 628 IPR016024 -
Bda15g01035 1877 MobiDBLite consensus disorder prediction 1029 1053 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01035 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - zju:107427509 2760.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00752 Bda-Chr3:6345321 Bda15g01035 Bda-Chr15:19333013 1.43E-106 dispersed
Bda13g01364 Bda-Chr13:36165859 Bda15g01035 Bda-Chr15:19333013 3.77E-33 dispersed
Bda15g01035 Bda-Chr15:19333013 Bda13g00208 Bda-Chr13:2641205 3.79E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g01035 Bda_Chr15 FPKM 7.347679 9.538762 18.027227 20.123253 52.356712 52.073093 56.651768 22.797447 21.082499