Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01040 ATGGGTAGTTCTTCTTTGTCGTTGTATGAAGTTCTGGGTATTCCGGCGAGTGCGAGTTGCCGCGAAATCAAATCGGCTTACCGGAGATTAGCTAGAACGTGTCACCCCGACGCTGTCGCTTTGAACCGGAAGGAAACGTCGGCGAATGAGTTTATGAAAATTCACGCGGCTTATTCAACATTATCAGACCCAGATAAAAGAGCAACTTACGATTTAGGCCTTTTCCGACATCGGACCCCCTTCGATTCGTCAGTAAAAATGGCATTTTGCTCATCGCCGGCGACTGGTTTTTCCGGTCATACCAGCAGGAATTGGGAAACAGATCAATGTTGGTAG 336 47.62 MGSSSLSLYEVLGIPASASCREIKSAYRRLARTCHPDAVALNRKETSANEFMKIHAAYSTLSDPDKRATYDLGLFRHRTPFDSSVKMAFCSSPATGFSGHTSRNWETDQCW 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19435646 19435981 - Bda013028.1 Bda15g01040 22735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01040 111 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 3 111 - -
Bda15g01040 111 SUPERFAMILY Chaperone J-domain 4 77 IPR036869 -
Bda15g01040 111 PRINTS DnaJ domain signature 9 27 IPR001623 -
Bda15g01040 111 PRINTS DnaJ domain signature 27 42 IPR001623 -
Bda15g01040 111 PRINTS DnaJ domain signature 46 66 IPR001623 -
Bda15g01040 111 ProSiteProfiles dnaJ domain profile. 7 74 IPR001623 -
Bda15g01040 111 CDD DnaJ 9 63 IPR001623 -
Bda15g01040 111 SMART dnaj_3 6 66 IPR001623 -
Bda15g01040 111 Pfam DnaJ domain 8 71 IPR001623 -
Bda15g01040 111 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Bda15g01040 111 Gene3D DnaJ domain 2 89 IPR036869 -
Bda15g01040 111 PANTHER - 3 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01040 - - - tss:122661091 153.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda14g00609 Bda15g01040 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01374 Bda-Chr1:49613260 Bda15g01040 Bda-Chr15:19435646 4.97E-13 dispersed
Bda01g01533 Bda-Chr1:51265129 Bda15g01040 Bda-Chr15:19435646 1.91E-32 dispersed
Bda10g00184 Bda-Chr10:6025964 Bda15g01040 Bda-Chr15:19435646 1.22E-39 dispersed
Bda14g00609 Bda-Chr14:4588985 Bda15g01040 Bda-Chr15:19435646 9.01E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66