Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01042 ATGTATTTTAGTTGCGGAAACGACGCAGAGGCACGCATGGTGTTCGATAAAATGGCTGCTAAAAACTTGTATTCTTGGAACAATATGCTTTCTGGGTATGCAAAATTGGGGAGAATAAAACCAGCTAGGAAGTTATTTGATCAAATGCCAGAAAAGGACGTTGTTTCGTGGAATACGATGGTGATTGCCCATGCAAAGATGGGGCACTATCACGAGGCTTTAAAACTTTATAGCGAATTTCGAAGAAAATCAATTGGGTTTAATGCATTCAGTTTTGCTGGTGTTTTAACTCTTTGTGTAAAGTTCAAGGCTTTGCAGCTTACTAGACAAGTTCATGGGCAGGTATTGGTTGCTGGTTTCCGGTCTAATGTAGTGCTTTTGAGTTCAATTCTAGATGCTTATGCAAAATGCGAGGAGATGGAAGAGGCAAAGAGATTATTTGAAAAAATGCCTGTGAGGGACGTCCTTGCTTGGACCACCATGGTATCTGCCTATGCTAAATTTGGTGATATGGAATCTGCTAGTAAATTGTTCGATCGAATGCCTGAAAAGAACTCTGTCTCATGGACAGCTTTGATAGCAGGCTATGCTAGAAACTGTTTGGGGCATGAAGCCCTCGAATTGTTTAAGGAAATGATGATTTTACGGATCAGACCTGACCAATATACATTCAGTAGTTGTCTCTGTGCTTGTGCAACAATATCTGCACTGAAGCATGGAAAACAAATCCATGGATATTTGACGAGAACTAACTTTAACTCCAACACAATAGTTGTTAGCTCTCTAATTGACATGTATTCAAAATGTGGGAGTGTAGAAGCTGGCTGGCGAGTTTTCAGTCTCACCAGCTGCAAGCATGATTCTGTTCTATGGAATACAATGATGTCTGCTCTAGCGCAGCATGGCCAAGGTAAAAGCGCTATTCAGCTGTTCAATAAGATGGTGAAGTCAGGGGTGAAGCCTGACAGAATCACCTTCATCATAATTCTTAGTGGGTGTAGTCATGCAGGGATGGTACAATATGGTCTAATGTTTTTCAGATCAATGGGTAGCAATCTTGGCGTTCTTCCAGATCAAGAACATTATGCTTGCTTGATTGACCTTTTGGGTCGAGGTGGATATTTCATAGAACTGACGAATCAGCTGGAGAGGATTTCATGCAAGCCTGATGATAGTGTGCGAAACGCCTTACTGGGTGTCTGTGGAATTCACGGGAATATCGAGCTGGGAAAGAAAGTGGCTGAACACATCATTAATCTGCAGCCGGAATCCTCCTCAGCTTATGTGTCACTCGCTGGTATGTATGCTACTCATGGGCAGTGGGAGTCAATGGAGAAAGTAAGAGAAGTTATGAATGATAGATATGTGAAAAAAGAGCGTGCTATTAGTTGGATAGAAATTGAAAATAAAGTACATTCTTTCATTGTTTCGGATAGACTGCACCCATTGAAAGAAGATATATACAATATTTTGAATCAGATCGGTGGGCATATGGAACAGAATGCCTCAATCTCTTACTGA 1521 41.16 MYFSCGNDAEARMVFDKMAAKNLYSWNNMLSGYAKLGRIKPARKLFDQMPEKDVVSWNTMVIAHAKMGHYHEALKLYSEFRRKSIGFNAFSFAGVLTLCVKFKALQLTRQVHGQVLVAGFRSNVVLLSSILDAYAKCEEMEEAKRLFEKMPVRDVLAWTTMVSAYAKFGDMESASKLFDRMPEKNSVSWTALIAGYARNCLGHEALELFKEMMILRIRPDQYTFSSCLCACATISALKHGKQIHGYLTRTNFNSNTIVVSSLIDMYSKCGSVEAGWRVFSLTSCKHDSVLWNTMMSALAQHGQGKSAIQLFNKMVKSGVKPDRITFIIILSGCSHAGMVQYGLMFFRSMGSNLGVLPDQEHYACLIDLLGRGGYFIELTNQLERISCKPDDSVRNALLGVCGIHGNIELGKKVAEHIINLQPESSSAYVSLAGMYATHGQWESMEKVREVMNDRYVKKERAISWIEIENKVHSFIVSDRLHPLKEDIYNILNQIGGHMEQNASISY 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19458662 19460182 - Bda013030.1 Bda15g01042 22737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01042 506 Gene3D Tetratricopeptide repeat domain 108 185 IPR011990 GO:0005515
Bda15g01042 506 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Bda15g01042 506 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Bda15g01042 506 TIGRFAM PPR: pentatricopeptide repeat domain 128 154 IPR002885 -
Bda15g01042 506 TIGRFAM PPR: pentatricopeptide repeat domain 24 55 IPR002885 -
Bda15g01042 506 TIGRFAM PPR: pentatricopeptide repeat domain 324 358 IPR002885 -
Bda15g01042 506 TIGRFAM PPR: pentatricopeptide repeat domain 55 85 IPR002885 -
Bda15g01042 506 TIGRFAM PPR: pentatricopeptide repeat domain 157 185 IPR002885 -
Bda15g01042 506 PANTHER - 159 467 - -
Bda15g01042 506 PANTHER - 31 181 - -
Bda15g01042 506 PANTHER - 1 38 - -
Bda15g01042 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Bda15g01042 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Bda15g01042 506 SUPERFAMILY TPR-like 133 443 IPR011990 GO:0005515
Bda15g01042 506 Pfam PPR repeat 259 280 IPR002885 -
Bda15g01042 506 Pfam PPR repeat 128 153 IPR002885 -
Bda15g01042 506 Pfam E motif 404 466 IPR046848 -
Bda15g01042 506 Gene3D Tetratricopeptide repeat domain 201 336 IPR011990 GO:0005515
Bda15g01042 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Bda15g01042 506 Pfam PPR repeat family 52 99 IPR002885 -
Bda15g01042 506 Pfam PPR repeat family 287 334 IPR002885 -
Bda15g01042 506 Pfam PPR repeat family 184 232 IPR002885 -
Bda15g01042 506 Gene3D Tetratricopeptide repeat domain 337 472 IPR011990 GO:0005515
Bda15g01042 506 Gene3D Tetratricopeptide repeat domain 1 107 IPR011990 GO:0005515
Bda15g01042 506 SUPERFAMILY TPR-like 2 191 IPR011990 GO:0005515
Bda15g01042 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 153 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01042 - - - qsu:112017763 723.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g01042 Bda-Chr15:19458662 Bda08g01235 Bda-Chr8:50609088 7.00E-31 dispersed
Bda15g01042 Bda-Chr15:19458662 Bda04g00300 Bda-Chr4:46292169 9.81E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g130 . . . . . Bpe12g00113 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1222 Cone8ag1274 . . . . . . . Blo13g00520 Bda15g01042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008158 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g01042 Bda_Chr15 FPKM 0.0 0.0 0.0 0.666187 0.0 0.0 0.0 0.0 0.0