Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01045 ATGGGGAATGGAGATTTTGGTGAAGGAGGAGGAGGTTTCAGTAGGAAAGCTAGCCCTGGTAAAGCAACCATTCTGGCTCTTGGCAAGGCTTTTCCCCACCAGCTTGTCATGCAGGAGTACCTCGTTGATGGCTACTTCAAAAACACCAACTGCGATGATCCTGACCTCAGACAGAAGCTCACTCGACTCTGCAAAACGACAACAGTGAAAACCAGATACGTAGTGATGTCAGAGGAGATTCTAAAGCAATATCCAGAGCTGGCCATGGAAGGCCGACCAACAGTGAAGCAAAGGCTCGACATCTGCAATGTCGCAGTCACGGAAATGGCCGTCGAAGCTTCAAAAGCTTGCATCAAGAACTGGGGAAGGCCAGCTTCAGAGATAACCCACTTAGTCTACGTCTCTTCCAGCGAAGTCCGACTACCCGGCGGCGATCTCTATTTAGCCACTGGCCTCGGCCTCAGTCCCGATACTCAACGGGTAATGCTATACTTTATGGGCTGCTCCGGTGGAGTCGCTGGCCTCCGACTGGCAAAAGATATCGCCGAGAATAATCCCGGCTGTCGAGTGCTCCTCACCACATCCGAAACCACCGTTATAGGGTACAAACCGCCGAGTGCTCACCGACCTTATGATCTCGTCGGAGTGGCCCTCTTCGGCGATGGTGCCGGAGCAATGGTGATCGGTTCGGACCCGGTAGTAAATATCGAGCGTCCTCTTTTTGAACTTCACACCGCGATTCAGCAGTTCTTGCCGAACACGGAGAAAATTATAGACGGCCGACTGACGGAAGAGGGAATTAGTTTCAAGTTAGATAAGGAGCTTCCCCACATCATAGAAGACAACATCGAAAAATTCTGTGAGGACTTAATGGGAGTGGTCGGGTTCAACGGAAAGGAATATAACGAGCTATTTTGGGCGGTCCATCCGGGCGGGCCGGCGATATTGAACAGGTTGGAAAAGCGGCTGGATCTGTCGCCGGAAAAGCTGAACGCGAGTCGGCGGGCTCTGATGGACTACGGGAATGCGAGCAGCAATACGATTGTGTATGTGCTGGAGTACATGATAGAAGAGAGCTTGAAGATGAAGAAGGAAGGAGATGAAAATGGCGAGTGGGGATTGATTCTGGCTTTTGGACCTGGGATTTCCTTGGAGGGAATTCTGGCCAGAAACTTGGCTGTCTGTTTGTAA 1191 51.22 MGNGDFGEGGGGFSRKASPGKATILALGKAFPHQLVMQEYLVDGYFKNTNCDDPDLRQKLTRLCKTTTVKTRYVVMSEEILKQYPELAMEGRPTVKQRLDICNVAVTEMAVEASKACIKNWGRPASEITHLVYVSSSEVRLPGGDLYLATGLGLSPDTQRVMLYFMGCSGGVAGLRLAKDIAENNPGCRVLLTTSETTVIGYKPPSAHRPYDLVGVALFGDGAGAMVIGSDPVVNIERPLFELHTAIQQFLPNTEKIIDGRLTEEGISFKLDKELPHIIEDNIEKFCEDLMGVVGFNGKEYNELFWAVHPGGPAILNRLEKRLDLSPEKLNASRRALMDYGNASSNTIVYVLEYMIEESLKMKKEGDENGEWGLILAFGPGISLEGILARNLAVCL 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19492230 19493541 - Bda013033.1 Bda15g01045 22740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01045 396 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 16 393 IPR011141 GO:0009058|GO:0016747
Bda15g01045 396 Pfam Chalcone and stilbene synthases, C-terminal domain 242 392 IPR012328 -
Bda15g01045 396 SUPERFAMILY Thiolase-like 239 390 IPR016039 GO:0016746
Bda15g01045 396 Gene3D - 240 395 IPR016039 GO:0016746
Bda15g01045 396 PANTHER TYPE III POLYKETIDE SYNTHASE B 16 393 - -
Bda15g01045 396 PIRSF PKS_III 12 394 IPR011141 GO:0009058|GO:0016747
Bda15g01045 396 Gene3D - 13 239 IPR016039 GO:0016746
Bda15g01045 396 CDD CHS_like 22 388 - -
Bda15g01045 396 SUPERFAMILY Thiolase-like 19 233 IPR016039 GO:0016746
Bda15g01045 396 Pfam Chalcone and stilbene synthases, N-terminal domain 15 232 IPR001099 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01045 - - - tcc:18607619 667.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01904 Bda-Chr11:54246723 Bda15g01045 Bda-Chr15:19492230 1.44E-106 dispersed
Bda15g00878 Bda-Chr15:14329173 Bda15g01045 Bda-Chr15:19492230 0 dispersed
Bda15g01045 Bda-Chr15:19492230 Bda08g00024 Bda-Chr8:216428 8.40E-102 dispersed
Bda14g00599 Bda-Chr14:4547521 Bda15g01045 Bda-Chr15:19492230 8.46E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g01045 Bda_Chr15 FPKM 19.754972 24.756824 20.270176 19.306427 23.306782 23.842609 20.529957 18.869326 18.281935