Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01051 TTTCAGATTCAAAACAACATGGCTCTTCAGGCTGCTATTCTTGCAACAAAATTCCTTCGCCGGAATGTGCAGATTGGAGAAAAGGCAAGATCATTAGACGTTCCAAAGGGCTTCTTAGCGGTCTATGTTGGAGAGAGCTGCAAGAAGAGGCACGTGGTTCCAGTATCGTATTTGAATCATCCTTTATTCCAAGATCTACTGAGAAAAGCTGAAGAAGAATTTGGCTTTGCTCATCCTATGGGTGGTTTGACAATTCCCTGCAGAGAAGAAATTTTCTTTGAACTAACTTCTCGCTTGGGTAGTCTTTAA 309 41.75 FQIQNNMALQAAILATKFLRRNVQIGEKARSLDVPKGFLAVYVGESCKKRHVVPVSYLNHPLFQDLLRKAEEEFGFAHPMGGLTIPCREEIFFELTSRLGSL 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19554452 19554760 + Bda013041.1 Bda15g01051 22746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01051 102 Pfam Auxin responsive protein 28 98 IPR003676 GO:0009733
Bda15g01051 102 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 100 IPR003676 GO:0009733
Bda15g01051 102 PANTHER SAUR FAMILY PROTEIN 11 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01051 K14488 SAUR; SAUR family protein - ming:122085068 122.479
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00593 Bda-Chr14:4528536 Bda15g01051 Bda-Chr15:19554452 2.86E-43 dispersed
Bda14g00594 Bda-Chr14:4535675 Bda15g01051 Bda-Chr15:19554452 1.68E-33 dispersed
Bda15g01003 Bda-Chr15:18680068 Bda15g01051 Bda-Chr15:19554452 4.77E-58 dispersed
Bda15g01006 Bda-Chr15:18687901 Bda15g01051 Bda-Chr15:19554452 6.93E-48 dispersed
Bda15g01051 Bda-Chr15:19554452 Bda14g00592 Bda-Chr14:4527455 8.74E-32 dispersed
Bda15g01057 Bda-Chr15:19671970 Bda15g01051 Bda-Chr15:19554452 5.14E-23 dispersed
Bda15g01051 Bda-Chr15:19554452 Bda15g01053 Bda-Chr15:19558965 3.11E-30 proximal
Bda15g01051 Bda-Chr15:19554452 Bda15g01056 Bda-Chr15:19614436 4.63E-32 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g84 . . . . . Bpe12g00106 . . . Cmo11g01717 Cma02g00337 Cma20g00777 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00456 Csa07g00071 . . . . Bda15g01051 . . . . . Sed01g0233 . Cmo20g00776 Cma11g01404 . . . . . Bhi10g01905 Tan05g1204 . . . . . . . . . . . . Lsi11g01173 Csa02g01345 . Cme11g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g01051 Bda_Chr15 FPKM 25.918547 29.338223 25.675283 27.604652 29.54715 25.626976 29.976513 24.673538 22.473734