Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g01072 ATGGGGGCGTTATCACCGGCCTCTCATCTAATCCACAACCTCTTCCTTCATCCCAAACCCTCCTCCTCCTTCGCCTGCTTCTCTAAAATCCTACTCATTTCCTCTACCTCCATTTCCCTTCCTACTAAATGCTTCTTCCATGCTTCTCCACACTCTGCTAGTCCTTTCTCTCCTCGACCTTCGCTTACTTCACCTTCCCTAGCTCGCTTTTCATCTCTCTCTTCTCCTCCAACTCGACATCCCTCTGTCTACTCCGCAGAAGAAGATGAAGATGAAAATGAAGATGAGTATGAAGACGAATTGGAAATTGAAGGCCGCGATGAGGAAGTTGTGGGATTGGAGGTGGGAGATGGGACTGTGGAGATTTCGTCGCATTCAGTCGTAAGCGATGTGACTCCGCCTGTTCTGACCGTTAAGGAGAAGAAAGAGTTAGCTTCTTATGCTTATAGCTTGGGGGACAAGCTAAAATCGCAGTTGGTTGGAAAGTCGGGAGTTACGGCTAATGTTGCGACTTCTTTCGTTGAAACGCTCGAAGCGAACGAGCTTCTTAAGATTAAGATTCACAGAACTTGTCCAGGGGAGATACAAGACGTGGTAAAACAGTTGGAGGAAGCAACTGGCTCTGTCGTTGTAGGGCAAATAGGTCGAACAGTCATCATTTACCGGCCCAGTCTATCAAAGCTAAAGGCAGAAGAAAAAAAAAGGCAGGCGCGGAAAATTTTTGTGAGAAAAGATTTAAGAATGAGACCCACATTGCTGGATAAAATACAAGCACCTAGACGTTCAAACCGGGGTCGTAGGGGGAGTAGCAAGGTACTAATATCAAATTTCTCCCTTTGA 840 46.31 MGALSPASHLIHNLFLHPKPSSSFACFSKILLISSTSISLPTKCFFHASPHSASPFSPRPSLTSPSLARFSSLSSPPTRHPSVYSAEEDEDENEDEYEDELEIEGRDEEVVGLEVGDGTVEISSHSVVSDVTPPVLTVKEKKELASYAYSLGDKLKSQLVGKSGVTANVATSFVETLEANELLKIKIHRTCPGEIQDVVKQLEEATGSVVVGQIGRTVIIYRPSLSKLKAEEKKRQARKIFVRKDLRMRPTLLDKIQAPRRSNRGRRGSSKVLISNFSL 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19954108 19955764 - Bda013067.1 Bda15g01072 22767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g01072 279 ProSiteProfiles CRM domain profile. 134 233 IPR001890 GO:0003723
Bda15g01072 279 PANTHER CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED 5 272 - -
Bda15g01072 279 PANTHER CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED 5 272 - -
Bda15g01072 279 MobiDBLite consensus disorder prediction 67 81 - -
Bda15g01072 279 Pfam CRS1 / YhbY (CRM) domain 136 222 IPR001890 GO:0003723
Bda15g01072 279 SMART CRS1_YhbY_2 136 222 IPR001890 GO:0003723
Bda15g01072 279 MobiDBLite consensus disorder prediction 260 279 - -
Bda15g01072 279 MobiDBLite consensus disorder prediction 67 104 - -
Bda15g01072 279 Gene3D - 135 249 IPR035920 -
Bda15g01072 279 SUPERFAMILY YhbY-like 136 224 IPR035920 -
Bda15g01072 279 MobiDBLite consensus disorder prediction 87 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g01072 K07574 yhbY; RNA-binding protein - jre:109006512 230.335
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g22 . . . . . . . . . . . . . . . Cpe04g00105 . . . . . . . . Cla02g00490 Cam02g0499 Cec02g0500 Cco02g0506 Clacu02g0503 Cmu02g0499 Cre02g0831 . Cone8ag1226 . . . Csa07g00029 . Cme01g01351 . . Bda15g01072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01134 . Chy01g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010229 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32