Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00001 CCATTGGAAGCTTACTCTGACTCCATTACTGCCTTCTCCATCTTCTTCTTCTTCTTCTCAATTCTAAACATTTTGTGTCTGCATTTGAAAGCAAAAGGAATTGGAGTTGAAGAAATGACAATGGCGGAATCTGGAGGATGGACTCGTTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCTAGAGTTCCCAAAGAGATTCCTGAAATTCAGAATGGAGCAACTGAGAAGATGCGGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGACGAGGCTGAGGCTCTCGGTAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCGTGTGGAACTGGCAATCCTATTGATGACTGCTGGCGTTGCGATCCCAACTGGCAACAGAACCGCAAACGTTTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCTATCGGTGGTCGTGACGGTCGATTCTACATGGTCACTGACTCTGGTGATGACAACCCTGTCAACCCAAAGCCTGGTACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCATCTGAAACAAGAGTTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATAGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGTCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCTCCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGGCATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACAATTGCTTACAATCACTTTGGAGAAGGACTTATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCACGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCAAAAGAGGTGACAAAGAGAGTTGAGACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCATCCATGGTTGGTACTATAACATCCGATGCTGGTGCACTTTCCTGCCGGAGAGGCCATCGGTGCTAGCATTCCGATCCTCTCGACGATCACGGAACACCCTTTCTCTATTATTCTTCTGTGAATTTTTCAAATATTTACTTACAAAATAGCCTTACTCCCCACCAATCTCCATATATTCTATCAATTGATATCTCCTCCCCTCCTTCCTAATCTCTTCTATGATATCTAAAAACAAGTGTACATTTCATTCTCTCGTCTCATTACGGAGACGTTCCTATTTGAACTTGTCCCCAGTTTGCTGTTTGTCGAGAGTGAGACACTCCAAAATCGCTCAACCTCGGCCTGCTTCAACTTGAAAAAGACACCATTTGCCATTCAGCAAGCAGGTGCGGAAGCGTTGTTCATTTATTCCCTTCACACTTTCCCCACCCCTCTTCTTTCAACTATCATTATTCTTACTCTCTTATGTCTACTCTTCTGTCTTCTGTTCTTATAGGATCTGAATGGTCTGAGTGCTTTTTCTTTCTTTCCTTTTTCTACTTTTTTTCCCCTTTTTTTTTTTACACTATGTTCTGTTTAGTGATACAAGTTATAGTATGTTTGTCAAACATTGAATTATCAAAGCAAAAGTTTGCTAAAGATGATAGCAAATGTTGTATGCCTTTGTCTA 2062 43.45 MTMAESGGWTRLFLLVVFMLFVGTIARVPKEIPEIQNGATEKMRSSSNSSMAVRLDEAEALGNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYMVTDSGDDNPVNPKPGTLRHAVIQDEPLWIVFKRDMVIHLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSDAGALSCRRGHRC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16751 22177 + XM_039039085.1 Bhi01g00001 22774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00001 447 SMART amb_all 173 370 IPR002022 -
Bhi01g00001 447 SUPERFAMILY Pectin lyase-like 75 442 IPR011050 -
Bhi01g00001 447 Gene3D - 98 440 IPR012334 -
Bhi01g00001 447 Pfam Pectate lyase 184 362 IPR002022 -
Bhi01g00001 447 PANTHER PECTATE LYASE 18-RELATED 14 444 IPR045032 GO:0030570
Bhi01g00001 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Bhi01g00001 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Bhi01g00001 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Bhi01g00001 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Bhi01g00001 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Bhi01g00001 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Bhi01g00001 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Bhi01g00001 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Bhi01g00001 447 PANTHER PECTATE LYASE 14 444 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi01g00001 Bhi12g01517 CCT
Bhi01g00001 Bhi12g01517 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00001 Bhi-Chr1:16751 Bhi12g01517 Bhi-Chr12:49105909 0 dispersed
Bhi01g00001 Bhi-Chr1:16751 Bhi12g01516 Bhi-Chr12:49105909 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00001 K01728 - csv:101218188 868.226