Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00111 ATGGTAGTTACAGGCTTCATCCACCATAAGCCATCACTTAACAAGCTCATTGCCCATATCCTCTCAATGGGCTCGCTTGGCGTTGTCTATGCTTATTCAGTTTTTGCTCACACTCAAGAGTTAGATATACTTACTTGGAACACCATGTTGAGAGGCTTTGTGAATTCCAACATGCCGAGAAGGGCGCTCCAAAGTTATATTGAGATGCTTGAACGGTCGAGGAATATTCCTGATAGATTTACATTTCCTTCTCTGCTAAAGGGTTGCGCCCTTTTATTGGAATTCAAAGTTGGGAAGATTCTACATGGCCAAGTCATCAAGTATATGCTTGATTCAGACCTGTACATAGAAACCACATTGTTAAATATGTATGCAGCCTGTGGGGATTTAAACTCTGCGAGGTTCCTGTTCGAGAAAATGGGCCATAGAAACAAAGTGGTGTGGACTTCGATGATTAGTGGTTATACGAAAAACAATTGTCCTAATGAGGCTTTGCTTCTGTACGAGAAAATGGAGGAAGATGGGTTTTGCCCTGATGAAGTTACCATGGCGACACTCGTATCAGCTTGTGCTGAAATGAAAGATTTGGGTGTTGGAATGAAGCTGCATTCTCGCATTCGTGAGATGGGTATGAAGATTTGTGCTGTTCTAGGGAGTGCTTTGGTTGATATGTATGCTAAATGTGGGGATCTAAAAACTGCAAGGCAAGTGTTTGATCATTTGTCTGAGAGAGATGTATATGCTTGGTCGGCTTTGATTTTTGGTTATGTCAAAAACAACAAAAGCACAAAGGCGTTACACTTATTCAGAGAAATGTCTGCTGGCTCAAACATGCTTCCGAATGAAGTCACGATTCTAGCCGTCGTTTCGGCCTGTGCTCAACTGGGTGACTTAGAAACAGGGAGGTGGGTTCACGACTATATTGTCAGGACTCAACAGGATCATTCTGTTAGTTTGAGTAACTCATTGATTGACATGTTTTCAAAGTGTGGAGACATAGATGCTGCTGAAAGAATCTTTGATGGCATGTCGAAAAGAGATTTGATCTCTTGGAATTCTATGGTGAATGGTTTTGCTCTACATGGCCTTGGCAGGGAGGCTCTCACTCAGTTCCATCTAATGCAGACAACAGACTTGCAGCCAGACGAAATAACTTTCATCGGGGTACTGACTGCCTGCAGCCACGCAGGATTAGTTCAAGAGGGCAAGAAGCTATTCCATGAAATGGAAGCATTATATGGAATCAGACCTAAGTTGGAGCACTATGGGTGTATGATAGATCTTTTATGTAGAGCAGGACTTCTGGCAGAAGCTCGGAAATTTATACAAGTAATGCCTTTACAGCCAAATGGTGCAATATGGGGCTCTATGCTTGGCGCTTGCAGAGTATATAACAATCTTGAGCTGGGAGAGGAAGCTGCAAGATGTCTGCTAGAACTCGAACCAAAAAATGATGGAGTTTACATTTTGCTCTCTAACATTTATGCAAGAAGGCAACTGTGGAATGAAGTGAAAAAAGTTAGAGAATTAATGAATGAGAAAGGAATTCAGAAAACACCTGGTTGCAGTTCAGTTGTCATCGATAACGCCACCCATTCATTTCTGGCTGGAGATTGTTCTCACCCAGAAACAACTGAAATATTTATAATGCTTCGACAAGTTAAAGAGAAGCTGAAGCTGGCAGGCTATGTTGCAGATATCTCGGAAGTATTACTCAATATTGATGATAATAAGAAGGAAGAATCAGTTCTTCAACATAGTGAAAAACTAGCTTTATGTTATGGCTTATTGAAATCTAAGATAGGGGGAAGAATTGTTATCCTGAAGAACCTTAGGGTCTGTTCAGACTGTCATACTTTAATAAAACTAGTCTCAAAGATTTACCAAAGGCAGATAATAGTAAGGGATCGAAACCGTTTCCACCACTTCAGAGATGGATTCTGTTCTTGCAGAGATTATTGGTGA 1965 41.17 MVVTGFIHHKPSLNKLIAHILSMGSLGVVYAYSVFAHTQELDILTWNTMLRGFVNSNMPRRALQSYIEMLERSRNIPDRFTFPSLLKGCALLLEFKVGKILHGQVIKYMLDSDLYIETTLLNMYAACGDLNSARFLFEKMGHRNKVVWTSMISGYTKNNCPNEALLLYEKMEEDGFCPDEVTMATLVSACAEMKDLGVGMKLHSRIREMGMKICAVLGSALVDMYAKCGDLKTARQVFDHLSERDVYAWSALIFGYVKNNKSTKALHLFREMSAGSNMLPNEVTILAVVSACAQLGDLETGRWVHDYIVRTQQDHSVSLSNSLIDMFSKCGDIDAAERIFDGMSKRDLISWNSMVNGFALHGLGREALTQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFHEMEALYGIRPKLEHYGCMIDLLCRAGLLAEARKFIQVMPLQPNGAIWGSMLGACRVYNNLELGEEAARCLLELEPKNDGVYILLSNIYARRQLWNEVKKVRELMNEKGIQKTPGCSSVVIDNATHSFLAGDCSHPETTEIFIMLRQVKEKLKLAGYVADISEVLLNIDDNKKEESVLQHSEKLALCYGLLKSKIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQIIVRDRNRFHHFRDGFCSCRDYW 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2310727 2312691 - XM_039050636.1 Bhi01g00111 22884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00111 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Bhi01g00111 654 PANTHER - 176 293 - -
Bhi01g00111 654 PANTHER - 1 175 - -
Bhi01g00111 654 PANTHER - 255 648 - -
Bhi01g00111 654 SUPERFAMILY TPR-like 153 508 IPR011990 GO:0005515
Bhi01g00111 654 Pfam DYW family of nucleic acid deaminases 562 654 IPR032867 GO:0008270
Bhi01g00111 654 Gene3D Tetratricopeptide repeat domain 4 97 IPR011990 GO:0005515
Bhi01g00111 654 Gene3D Tetratricopeptide repeat domain 99 195 IPR011990 GO:0005515
Bhi01g00111 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 176 293 - -
Bhi01g00111 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 175 - -
Bhi01g00111 654 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 255 648 - -
Bhi01g00111 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 76 IPR002885 -
Bhi01g00111 654 Gene3D Tetratricopeptide repeat domain 320 554 IPR011990 GO:0005515
Bhi01g00111 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Bhi01g00111 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Bhi01g00111 654 Gene3D Tetratricopeptide repeat domain 196 319 IPR011990 GO:0005515
Bhi01g00111 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 346 IPR002885 -
Bhi01g00111 654 Pfam E motif 464 525 IPR046848 -
Bhi01g00111 654 Pfam PPR repeat 118 141 IPR002885 -
Bhi01g00111 654 Pfam PPR repeat 321 347 IPR002885 -
Bhi01g00111 654 Pfam PPR repeat 385 410 IPR002885 -
Bhi01g00111 654 Pfam PPR repeat 421 445 IPR002885 -
Bhi01g00111 654 Pfam PPR repeat 349 375 IPR002885 -
Bhi01g00111 654 Pfam PPR repeat family 42 90 IPR002885 -
Bhi01g00111 654 Pfam PPR repeat family 144 191 IPR002885 -
Bhi01g00111 654 Pfam PPR repeat family 245 293 IPR002885 -
Bhi01g00111 654 TIGRFAM PPR: pentatricopeptide repeat domain 349 383 IPR002885 -
Bhi01g00111 654 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Bhi01g00111 654 TIGRFAM PPR: pentatricopeptide repeat domain 321 347 IPR002885 -
Bhi01g00111 654 TIGRFAM PPR: pentatricopeptide repeat domain 247 274 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00111 - - - cmo:103483399 1220.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00111 Bhi-Chr1:2310727 Bhi02g01030 Bhi-Chr2:23226590 4.79E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g767 . . . . . . . . . . . Cma14g01836 . Car14g01644 . . Cpe03g01537 Bhi01g00111 . . . . . . . . . . . . . . . . . Lsi05g01761 . . . . . Bda11g00645 . . Bpe13g00541 . . . . . . . . . . . . . . . . . . Cla05g00418 Cam05g0456 Cec05g0463 Cco05g0465 Clacu05g0453 Cmu05g0431 Cre05g0492 . . Chy06g00442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000224 3 8 4 3 3 4 6 4 4 5 6 3 5 6 3 6 3 4 5 3 5 3 4 3 4 6 4 0 3 4 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00111 Bhi_Chr01 FPKM 0.256487 0.599087 0.793882 1.158182 0.705511 0.691847 0.60756 0.0 0.0 0.0