Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00227 TAAAGAAAGATTTCAATTGATAAGTCGAGTATAAATTGTTAGTTTCCCTCATAATTATCAATTGGCGAAATTATTTTAAAATATTGTCACCCACTTTATTGCCTTTTTTTCTGAAACTCTCTATCTCTCTCTGTTCAGAAGCCCTCACTAATCTAACGCTAAAGAACCATCTTCTTCATCTTCCAGATTGAGAAGAGTTTTAGTAGCAGCAGCCAGCCTTAATGTGTTCACTTCTCTTTCTCCATCTCAATCTCTCAAGATCTTGAAGCTTCGTTCTTCAATCTTTCAATCTTCATTTTCTCATGTGATTGCTGGGTTCGCTGTAAATTTCCATCAGCAGTCTTGCTTCTCTTCATCTCCAATTCCAGGGAACCATGGGGAAGAAAGTTAAGAAGAAGACCAATAGAGCTCCTCCGAAAGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCGAAACAGCACAACGGTGGAGACTGCTGATGAGGACGTTCCAGTTGTGAAGGAGAAAAGCCAATGCCGGCATCTTGATAAATGCTTTAATTTGAATGAGTTATCATCTAAACTTGGGTCTTCCGAACCTATTAGCTGCGAAGATTGTCAAGATAGTTCAGCTGATAGAAGGGGAACTAGGGGGAAGGCTAGACATGGGAAGAAAAAAGGGGGAACTTCTGTGGATGTAAAAACTGATGCCAAAGCTATTTGGATTTGTTTGCAGTGTGGGCATTATGCCTGTGGGGGTATTGGACTTCCTACAAACCCTCAGAGTCATGCTGTTCGGCACGTCAGGCAAACTCGTCACCCTGTGGTGATTCAGTTTGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAATACCTTACTTCCAGTAGAGAAAACTGAAGAAAATGGTGAACAAAAGGATGACTTGTCTGATGTGGTGAAATTAATTCGGGACCGGTCAATGGAATCCTCGCCTGTGGATGTTAAGAACACATGGCACACGAGTAGTGAAGTTACAGCTGGAACTGAATCAGAAAGTTCGGTATTAAGTGATTTGGACAGAAGAAATCATTATGTTGTAAAAGGATTGATTAATCTTGGTAATACTTGTTTTTTCAATTCAATCCTTCAAAATCTCTTGGCCATTGATATGTTGAGAGATCATTTCACAAAATTGGAAGAATGTGTTGGACCTTTAACTATAGCTTTGAAGAAGATCTTTATAGAAGCAAGAATGGAAACCAGAATGAAATGTTCGATAAATCCAAGATCAGTTTTTGGCTCCATCTCTTCCAAAGCCCCTCAGTTCAAAGGATATGAACAACATGACAGTCATGAATTGCTCCGCGTCCTACTCGACACATTGTCTTCTGAAGAGCTGACTTCGAGAAAGATGACGAATTCTAAGGAAGAGAGAATATCTGGAAATCCCACTCCTACTTTTGTTGATGAGATGTTTGGGGGGCAAATATCAAGTGCCGTATGTTGCAAAGAATGTGGCCATATATCGACAGTTTATGAGCCATTTCTAGATCTTTCTCTCCCCGTTCCAATGAAGAAATCTCTGGCCAAAAAGGTCCAACCAGCCTCTCGAGCAAAGAAGACAAAACTACCACCCAAGAGAAATGGAAAGACGATTCCTAAAACTGACAAGGCTTCAGATGTTGTAACAGTTCAAATTGCCTCAGTTCCATCATCTAGTAATGAGTCTTCCCTTCCATCAGAGGCCGGTGTGAGTAGCACGACTACCATCATGGAGAAGACCTTAACTTCTCAGAATGTCTCAGATGTTAAAGAGTCGGAAAAAGAAGTTTTGATTGAGAATGGAGGAGAATGTGCTTCAGATAATTTGACGTGGATGGATTTCCTTGGACCAGAACTGAATGCCAAAAATTGTGATATTTCCACTATTCAGGATTCTGAAAATAATGTTGAATTATTTATTAGTGACGACTCACAACAAAGCGTCTCTGGGTTGAGTATGCAGGTTTCATCCCTTCACAATGAGCCCAATCAACGACCAGATTTTTCTTCAGTGAATTCATGGGATGCCGAAGCTCCTTTACAGGTTCAAGCCTCTGAAGTTTTGCTGCTTCCTTACAAGGAAGAGAGTTCCACTGCTGAATTAGCAAAAGAAGATGATCAGGCCTCCTCATCAATTTTGGGCTGTGCTCAAGAAGATTTTGATGGATTTGGCCTTGGTGATATGTTTGATGAGCCTGAAATCGCTATAGGGCCCATTGCAAGGCCCTCCATGTCGAATGAAGTTGCAGAAAGTAGTTTTAATAGTGAATCTGATCATGAGGAAGTTGATAACACCGATGCTCCCGTCTCTGTGGAGAGTTGTCTAACTTATTTCACAAAGCCGGAACTTCTGTCCAACGAAAATGGATATAACTGTGAGAAATGCTCAAAAAGACTACAACGACAAAAGCTGGAAATGAAGAGACAATCAAAAGTTGCTTGCAAAGCTGTAGCAAATGGATGTCAAACTGCAATAGGGGGTGATACATCTAGTTTCAACGAGGACTCTTCAGTTGAAGTAAAAAATCAAAGAAATGTGAATTTAGCAAATGGTTCTGTAAGTAACAATAGTGGTGAAAGCTTGAATTTGAAAGAAAATGCAGATTGTTCCAGTCGAGATTGCACAAAACCTGCTAATTGCCAGAAAGGCAAGACGGATTCCCTTCCTTTAGATGAGGATGATGCTAAGGTTGACACAGATATGAATCCTGGCCTAGCATATTCTTCAGGTTGTAATAACACCAGCAATCAAGAGAATTCAGATGATAGATCCGGTTGTTCTCTTTCCAACGATGATCCTAAAAGCAGTGCACTTGCAAAAACTAATACTGAGCTCTTGAGTTCACAAATATCTGCCGAGAATCAATCAGAAAAAAGTGAGGACGGTGAGATGGATTCTGATTCAACAATTGTGAATGTGAAAAGAGATGCAACAAAGAGGTTTCTTATTCACAAGGCCCCTCCTATCTTGACAATTCATATTAAGAGGTTCAGTCCTGATGCTCGGGGTCGTTATAGTAAATTGAATGGCCACATCAGATTCAAGGAAACAATTGATCTTAAACCATACCTGGATACACGGTGTGTGGATAGGGACAAGTGTAACTATCGGTTGGTCGGGGTCGTGGAGCACTCCGGATCTATGAGAGGAGGCCATTATGTTGCATACGTGAGAGGGGGCAACAGGAAGAGGAGCAATGGGGAAGCTGAGGAAGATGCTTCTGTTTGGTATTATGCAAGTGATGCCGTCGTAAATGAGGTTACCCTGGATCGGGTTCTTGGTTGCGAGGCATACATCCTATTTTATGAGATAACATGAAAAATCTTTGGCTAACTCATGCTTACTTCTTCATAACCTCCAACAGAAGACAGAAGAGAGAGAAGAGAGAGAGGCAGGTGAGTGTACAACACCTTTTACAAAAGAATTTTCCCCCCAGTAAAAATCCATTCTTTTGATCTATTAGATCTAGGTTTTGAAATATGATTATCACAAAATTTGTCTTATTGCCATTGCCAATAGGGGGTGGAGGGCTTGAGACCCTGGCCTTTGTCACCCCGGATTTTGTATTTTTTGTTATATGAGAGATATGATTGCTCAAATTGTTCCTTTTTTCCATTTTTGCTCAAA 3641 40.95 MGKKVKKKTNRAPPKEKRVSSSSPRKVPQRNSTTVETADEDVPVVKEKSQCRHLDKCFNLNELSSKLGSSEPISCEDCQDSSADRRGTRGKARHGKKKGGTSVDVKTDAKAIWICLQCGHYACGGIGLPTNPQSHAVRHVRQTRHPVVIQFENPQLRWCFSCNTLLPVEKTEENGEQKDDLSDVVKLIRDRSMESSPVDVKNTWHTSSEVTAGTESESSVLSDLDRRNHYVVKGLINLGNTCFFNSILQNLLAIDMLRDHFTKLEECVGPLTIALKKIFIEARMETRMKCSINPRSVFGSISSKAPQFKGYEQHDSHELLRVLLDTLSSEELTSRKMTNSKEERISGNPTPTFVDEMFGGQISSAVCCKECGHISTVYEPFLDLSLPVPMKKSLAKKVQPASRAKKTKLPPKRNGKTIPKTDKASDVVTVQIASVPSSSNESSLPSEAGVSSTTTIMEKTLTSQNVSDVKESEKEVLIENGGECASDNLTWMDFLGPELNAKNCDISTIQDSENNVELFISDDSQQSVSGLSMQVSSLHNEPNQRPDFSSVNSWDAEAPLQVQASEVLLLPYKEESSTAELAKEDDQASSSILGCAQEDFDGFGLGDMFDEPEIAIGPIARPSMSNEVAESSFNSESDHEEVDNTDAPVSVESCLTYFTKPELLSNENGYNCEKCSKRLQRQKLEMKRQSKVACKAVANGCQTAIGGDTSSFNEDSSVEVKNQRNVNLANGSVSNNSGESLNLKENADCSSRDCTKPANCQKGKTDSLPLDEDDAKVDTDMNPGLAYSSGCNNTSNQENSDDRSGCSLSNDDPKSSALAKTNTELLSSQISAENQSEKSEDGEMDSDSTIVNVKRDATKRFLIHKAPPILTIHIKRFSPDARGRYSKLNGHIRFKETIDLKPYLDTRCVDRDKCNYRLVGVVEHSGSMRGGHYVAYVRGGNRKRSNGEAEEDASVWYYASDAVVNEVTLDRVLGCEAYILFYEIT 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4249636 4254931 - XM_039044535.1 Bhi01g00227 23000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00227 985 Pfam Ubiquitin carboxyl-terminal hydrolase 234 982 IPR001394 GO:0004843|GO:0016579
Bhi01g00227 985 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 983 - -
Bhi01g00227 985 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 233 985 IPR028889 -
Bhi01g00227 985 Gene3D Cysteine proteinases 748 985 - -
Bhi01g00227 985 Gene3D Cysteine proteinases 215 436 - -
Bhi01g00227 985 SUPERFAMILY Cysteine proteinases 225 983 IPR038765 -
Bhi01g00227 985 MobiDBLite consensus disorder prediction 68 102 - -
Bhi01g00227 985 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 234 249 IPR018200 GO:0004843|GO:0006511
Bhi01g00227 985 MobiDBLite consensus disorder prediction 394 423 - -
Bhi01g00227 985 MobiDBLite consensus disorder prediction 24 38 - -
Bhi01g00227 985 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 916 933 IPR018200 GO:0004843|GO:0006511
Bhi01g00227 985 MobiDBLite consensus disorder prediction 748 762 - -
Bhi01g00227 985 MobiDBLite consensus disorder prediction 748 848 - -
Bhi01g00227 985 MobiDBLite consensus disorder prediction 398 413 - -
Bhi01g00227 985 ProSiteProfiles Zinc finger UBP-type profile. 49 186 IPR001607 GO:0008270
Bhi01g00227 985 SUPERFAMILY RING/U-box 50 165 - -
Bhi01g00227 985 MobiDBLite consensus disorder prediction 785 835 - -
Bhi01g00227 985 Pfam Zn-finger in ubiquitin-hydrolases and other protein 75 165 IPR001607 GO:0008270
Bhi01g00227 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 188 IPR013083 -
Bhi01g00227 985 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 983 - -
Bhi01g00227 985 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270
Bhi01g00227 985 MobiDBLite consensus disorder prediction 1 49 - -
Bhi01g00227 985 Gene3D Cysteine proteinases 612 699 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00227 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1728.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00227 Bhi-Chr1:4249636 Bhi08g00310 Bhi-Chr8:12036695 2.94E-09 dispersed
Bhi01g00226 Bhi-Chr1:4249636 Bhi01g00227 Bhi-Chr1:4249636 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00227 Bhi_Chr01 FPKM 70.335236 70.058418 77.74733 80.365189 52.250614 49.530945 51.447685 25.893147 21.045576 22.342531