Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00235 AACAATCAATTCTGAGTTCGTTGTTCCTCCATTAATGGCGGTTTAAAGCTCCAAAATTTCACGTGGGTCATTGCCCTCCAATAAAACAATTTTGAAATATTGTTCTAAAAGCTTTTTTAAAAAATCGAGTTCTTCAAATTCACTTTTTTTGCTTAGAAATTTGTTTATAAGATTTTAAGAATTTTCAAATGAGAAAAAAAAAGGTTTAAAAATCAATCACATGGCAAGTAGACTGCAGGTTGCCTTTCTGATTTAGCCTTTTACCCACGCTCATTACAGACTCATACTGACAAAGACAGAAGAAAGAGAAAAAAATAAAAAAGGAAAAAAAAATTGGGACAGAGACACTACGCAGAAACATCGCTGTCTAATTTCTCACTATTTTTTTTTAATTAATTTGATTTTTTTTTCTTTTTTCTGCGAATTATTTCTTGATTGCTTGACCCATTTTCGGGGCTCCGACCCAAAAGGGTAGTTTAAGTTAATTGAGTGAATTTTTTGTTTGTTCCTTTTGTTCTCACATTTTTTCGTTTTGTTATTTGATTTTTTTTCCCACTCGCCGGAGCAAAAATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCCGCCATTCCGGCGCTGCCGATGGACGGCGGCGGTGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCTGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACTCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTTGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGAAAGTCAAGAAACAAGTTCCTCTTCGTCGCCATCGTCGAGAATAATGACACAGGACCTGAATGACGGTTTCCAAGTCACAGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGAAAATACTTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTAAGTGATCAGGCTGCAGCGTCTGCCGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGACTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCTTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGGATAGGCGATTGCTCAATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCGCCGATTGGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCAGTATTTAGTCACGGAGATTCAATGGCTCTCGAGGGCAATGCCCGGCACGATGTCGAATGGATGATGAGTAATATTGGATGAAACATAGGACTCTCTTTCTAAAAGTCCAGCCTTTTCTTCTGATCTATTTGCTCACTTCTTTTTTCTTTTTCTTTTTTCTAGCTCATCCAAATGTGTTTACATCTTTAACGAAGTATTATACAATCTATTTTCTGGTTTGTATATTCTTTATAATCAGACCCCTCTGATCTGCATTAGAGATTGATCTTCTTTTGCTTTTGGAAATGTGAAAGTTTCCATATGAATGTTCCCTTTGTACAATCAAATCACAAAAGAAACAAAGTGCTATTGACCAACTTTTGAGATGATGCCAAAA 1798 41.6 MLSGFSQEPAGMYSAIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4370350 4374918 - XM_039022116.1 Bhi01g00235 23008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00235 310 MobiDBLite consensus disorder prediction 108 135 - -
Bhi01g00235 310 Coils Coil 200 220 - -
Bhi01g00235 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 307 IPR044848 GO:0003700
Bhi01g00235 310 Pfam Myb-like DNA-binding domain 53 103 IPR001005 -
Bhi01g00235 310 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
Bhi01g00235 310 Pfam MYB-CC type transfactor, LHEQLE motif 143 188 IPR025756 -
Bhi01g00235 310 PANTHER PROTEIN PHR1-LIKE 2 12 307 - -
Bhi01g00235 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Bhi01g00235 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
Bhi01g00235 310 MobiDBLite consensus disorder prediction 119 135 - -
Bhi01g00235 310 Gene3D - 49 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00235 - - - csv:101213244 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00235 Bhi-Chr1:4370350 Bhi05g01981 Bhi-Chr5:61216090 2.34E-74 dispersed
Bhi03g00734 Bhi-Chr3:13713006 Bhi01g00235 Bhi-Chr1:4370350 4.64E-58 dispersed
Bhi05g00013 Bhi-Chr5:339955 Bhi01g00235 Bhi-Chr1:4370350 1.24E-55 dispersed
Bhi05g00014 Bhi-Chr5:340462 Bhi01g00235 Bhi-Chr1:4370350 5.89E-27 dispersed
Bhi01g00234 Bhi-Chr1:4370350 Bhi01g00235 Bhi-Chr1:4370350 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi09g02029 CCT 1 177 G2-like Transcription Factor Family AT5G42630 60.4 9.3e-42 167.9
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT1G25550 54.3 7.2e-52 201.8
Bhi07g01367 . 19 257 G2-like Transcription Factor Family AT1G25550 55.4 4.7e-51 199.1
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT3G25790 51.4 1.7e-42 170.6
Bhi08g00576 CCT 1 245 G2-like Transcription Factor Family AT3G46640 52.8 1.6e-58 224.2
Bhi11g02825 . 5 185 G2-like Transcription Factor Family AT3G46640 51.3 7.7e-37 152.1
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT5G05090 56.7 2.6e-75 279.6
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT5G05090 53.0 1.2e-67 254.2
Bhi01g00234 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.6e-65 246.1
Bhi01g00235 . 12 310 G2-like Transcription Factor Family AT4G13640 54.9 2.3e-56 216.9
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi06g00890 . 1 229 G2-like Transcription Factor Family AT1G69580 55.9 1.8e-49 194.1
Bhi06g00889 . 1 223 G2-like Transcription Factor Family AT1G69580 56.7 3.1e-49 193.4
Bhi05g01980 . 1 382 G2-like Transcription Factor Family AT1G79430 54.5 1.6e-88 323.9
Bhi05g01982 . 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi05g01981 CCT 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi10g00928 CCT 1 364 G2-like Transcription Factor Family AT1G79430 52.2 5.1e-74 275.8
Bhi01g00234 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 5.3e-39 159.5
Bhi01g00235 . 39 198 G2-like Transcription Factor Family AT1G79430 61.2 2.9e-37 153.7
Bhi03g00736 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g00737 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 1.2e-90 330.9
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT3G10760 57.8 1.2e-80 297.7
Bhi03g02516 . 1 203 G2-like Transcription Factor Family AT2G40970 61.1 1.5e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8 PF00249 Myb_DNA-binding 1.80E-07 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00235 Bhi_Chr01 FPKM 32.787247 39.447525 7.443787 7.728468 29.354137 29.172291 29.572937 0.0 0.0 0.0