Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00307 CACCCTCTCCATTTTTGGTGGTGGGAATCAAAACACATCTCTATTGATTTTTCTCTTTCTTTTTCTTTTTTAATATTTATTTGCCATTTTCTTCTTTTGGGGTTTTCAGATTCTTCCCCAAATTTTCCTTTTTTGCTCTCCCAAAATGCTTCCTTAGGGTTTGTTTTTGGCTTGAAGGAGAAAAAAGAACATATTTCCCAAATTTTTCCATTTTTGTTGCCTATTTCTGTGTTTTTCTTCCTTCCCATTTCAGCTAATTTTCTACAACTTCTCATTGGGTTGATCCAAACAATAATCCTTATTATTATTATTTTTTCTTTCCATTTTTGGCCCTCCTCTTTCACTCTGCTCTACCAGAAACCAAGCCTGTTTGAGAAAAAAAATGGTGAGAGGAAAAACACAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCCTTGAGCTCTCAGTTCTTTGTGATGCCGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTTTATGAATTTTCAAGCTCAAGCGTGCAGGCAACTGTGGGAAGATATCTAAGGCATACAAGATCAGAAACCCATCATCTTGAACCTTTAGCTCATCATCACGATGATTTACAAGTTGTTCAGAATGAGGCTGCAAGTTTGTTAAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGATCTAGGATCAAGCTCCTTTGATGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGTTTATCCCATGTTAGAGCTAGAAAGAACGAGCTTTACAAGGAACAGATTGAACAACTAAAACGAAAGGAGAAGAATTTGGCAGATGAAAATGCAAAGCTGGCCAAAAAGTACTGTGTTGAACAAGAGCGTCAACAATCACCAACTCAACAGTTAGCAGAAGTTTCACCTTATCCAGAAAGTAGCTCCATTTCAGACGTTGAAACCGATTTGTTCATTGGACCTCCCAACAAGTCCAGATCCAACTCCAAGTGACTTCTTCGTTTGGTAGTACCCTAGTCAACCACTTAACCACCCTTTTTTTTCTTCTTTAAATATAAATCTATCACAATTAATTAATAATAATTTCCAACTGCTTTTCCTACCTTTTTTTTTATTATATAATTTGCCAGCTTGAATAATGACGTCAATAAGAAGAAGAGAGCCATCGTGTGTGTTGAGTACGGGAGGGAATTATTGGCTTGCCAATTAAATTGTGTTTTACTGTATATTAATTCTATATATTTTCTCTTTTATCGATTCTCA 1315 36.96 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKALELSVLCDAELALIIFSSRGKLYEFSSSSVQATVGRYLRHTRSETHHLEPLAHHHDDLQVVQNEAASLLKEIESLEVSKRKLLGEDLGSSSFDELQQIEQQLERSLSHVRARKNELYKEQIEQLKRKEKNLADENAKLAKKYCVEQERQQSPTQQLAEVSPYPESSSISDVETDLFIGPPNKSRSNSK 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5712236 5717830 - XM_039046716.1 Bhi01g00307 23080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00307 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi01g00307 220 MobiDBLite consensus disorder prediction 175 220 - -
Bhi01g00307 220 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g00307 220 PANTHER MADS-BOX PROTEIN SOC1 1 213 - -
Bhi01g00307 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi01g00307 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi01g00307 220 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Bhi01g00307 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi01g00307 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi01g00307 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi01g00307 220 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Bhi01g00307 220 Coils Coil 131 173 - -
Bhi01g00307 220 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g00307 220 PANTHER MADS BOX PROTEIN 1 213 - -
Bhi01g00307 220 Coils Coil 90 117 - -
Bhi01g00307 220 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bhi01g00307 220 MobiDBLite consensus disorder prediction 178 204 - -
Bhi01g00307 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00307 Bhi-Chr1:5712236 Bhi12g00330 Bhi-Chr12:9514524 1.52E-66 dispersed
Bhi01g00306 Bhi-Chr1:5712236 Bhi01g00307 Bhi-Chr1:5712236 7.40E-162 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17 PF01486 K-box 1.50E-27 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00307 - - csv:101209501 343.584