Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00409 ACCACGGTTCCACTCTAGAGGCGGCGGCGGCGGCGATAGTCTTATGGCCTCTGGTGCTATTGCTCAGCCACATCTTGTTACTCAATCTTCTTTCGCCAAATCAATGTTCTCTTCCCCCACGCTCTCTCTCGCTCTCGTACTACGAATATCGATGGGCTCGGCGCCGGGGAGATGATTCCAGCGGATGTTAGGAGGAGGAATAGAGAGGAAGAGGCAGCGGAGAGTAGATCTGGGAGCGAGAACATGGTGGACGGTGGTTCCGGCGAGGAAGTGGAGGGCGGCGGCGGTGGTGGTAGGAAGAAGAGGAAAAAACGGTACCACCGTCACAGTGCGGAACAGATTCAAGAACTGGAAGCTATGTTCAAAGAATGTCCTCATCCTGATGAAAAACAACGATTGGAGCTCAGTAGAAGACTCTCTTTAGAAACTAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACACAGTTGGAACGCCATGAGAACACATTACTAAGACAAGAGAATGAGAAGCTCCGTGCAGAGAACATGGCAATTCGAGAGGCCATGAGGGATCCAATCTGCTCCAACTGCGGCGGACCGGCCATCATCGGAGAGATCTCCATCGAAGAACAGCAACTCCGAATTGAAAACGCAAGATTAAAGGACGAATTGGATCGGGTGTGTGCCCTGGCTGGAAAATTCCTGGGACGGGCAGCGGTTCCGGTATCGCCACCATTGGCATCGAGCTCGTGTTTGGAGGAATATGGAGGTGGTGGAACGATGATGATGGAGAGATGTGTGTATTTGGAGATGGGTTTAGCAGCCATGGATGAGGTTGTGAAAATGGCAAATGAGGAAGAGCCATTGTGGGTTAGAGAGAAACTGAATGAAGAAGAATATTTGAGAATGTTCAGTGGGATTAAACACATTAATAATGGGTTTGTTTCTGAGGCTTCTAGACAAACTGCTCTTGTCTTCCTCAACACTTCTGCTCTCCTTGACACTCTCATGGATCCTGACCGGTGGGTGGACATGTTTCCGAACTTGGTCGCGACGGCTAGCATCGCCGACATAATCTCCGGCGGTCTCGGAGGAACCCGGAACGGCGCTCTTCAACTGATGCATGCAGAGCTTCAAATTCTGTCTCCAATGGTTCCGGTGAGACAGTTAAGCTTCCTTCGCTTTTGTAAGCAACACGCTGAAGGCGTTTGGGCCATCGTCGACGTCTCCATCGATCCCGTTACCGATACTTCTTCCTCTCCGTCGTGCCGGAGACTCCCCTCTGGCTGTCTCATCCACGACATGACCAATGGCTACTCCAAGGTTACTTGGGTTGAGCATTCGGAGTACGATGAAAGCTATATTCACGAGCTGTATCGGCCCCTGATTCGCTCCGGCCTTGGCTTTGGTGCGCAACGGTGGATCGCCGCCCTCCAACGCCAATCCGAGTGCCTTGCCATCCTCTCCACCCCTCTAGACCATTCTGGAATATCAGCAAATGGACGGCGGAATATGGTGAAGCTAGCGCAACGGATGACGGCAAATTTTTGTGCAGGAGTATGCGCGTCTACAGTGTACAAGTGGAACAAACTGAACACGAGGAATAACAACGTTGGAGAAGATGTGAAAGTGATGACGAGGAAGAGCGTGGAGGATCCCGGGGAGCCGCCGGGCACGGTGCTGAGTGCAGCGACGTCGGTGTGGGTGGCGGCCGCGGTGGAGAGAGTGTTTGAGTTTCTTCGTGATGAGCGGCTGAGGAGTGAGTGGGACATCCTGTCCAACGGCGGTCCCATGCAGGAAATGCTTCGTATCCCCAAATCACAACACCGTCACCATCCCAACGCCGTCTCGCTCCTCCGTGCCACCTCTCTAAATCCAAACCAGAGCAGCATGTTAATTCTACAAGAGACTTGCACCGATGCATCGGGGTCGCTTGTAGTGTACGCGCCGGTGGATATTCCGGCAATGCAGGCGGTGATGAACGGCGGGGATTCAGCCTACGTGGCATTACTACCGTCGGGGTTCGCGGTGGTGCCGGCAGAGGAGGATGGTGGCGGTGGCAGAGGGAGTTTGTTGACGGTGGCGTTTCAGATATTGGTGAATAGTTTGCCGACGGATAAGCTGACGGTGGAGTCGGTGGAGACGGTGAATAATTTGATTTCGTGTACGGTGCAAAAAATTAGAAACGCTCTCCGCTGTCACGAGCCTTCCACGTGACCCCCACCAAAGGATCTCTTCGATTTCGACCCGACGGCGACTCACCCTGCTGTGGTTTCCATTTTACCCCTCTCACCTTGAAGTTTGTGTAAGTTTTTTTTCAAAAAAAAAAAATCTTAAATTTTGTCATTTGTTTAAAATATATATTAGTTAAATTGCAAATATGGTCCCTACCGTTTCGAGAAAGTTAGAATATAGTCATGTGATTTTTAATTATAATTTAGTTATATAGTTTGATGATTTTTTCATAAATAGTCAAATAATACGACTATTTATAAGATTTTATCAAACTGTAAAAATTAAATTCTAACTTTTAAAACCATAAGAGCTAAATTCTAACATTTTATAAATTATAGGGATCAAATTTGCAATTTAACTTAAATATATCTAGTTTTTCAAAAATTTCAATATTACCTTTAGTCTTTCATAAATATTCCAAAGTTAACTTGGAGTAAAATTTTTCTTCATTATTTTTGGATGAATAGTGAGACATCTATAACGGTGATTTAAGACGATGTAATGATGTTCATGTCTCACTCCTCCTCCAACATTCAATGATGCGATGATGTTCATATGAGAATTTTGAAACCTTTATAAAAAGATCAAAGGTAATATTGCAATTTTTGAAAAAATAAAGTTATTTTTTTTTAAACAAATGAACAATTCAAGGATTTTTTTAATTATATAAATTGTTTATGATTATTATTACTTTAGAGGTAGATATGTTGAGAAAAATGTGAGGGTGGTATTGAGTCAAGAACGAACCGCCAATGTGTTGAGTATGACTCGGTGGGTGGGTTCGGGTATTGACTCTGGTCGACTCTCGTGTTGACTCATTTATCTAATTATGATATTTATTTTTATTGATAATTTGTTTTGTGGTTAGTCTGATTTAACCTGATTATATAATTTCAATGTATATTCTTTTAATATCATTCAAAAAA 3155 45.07 MIPADVRRRNREEEAAESRSGSENMVDGGSGEEVEGGGGGGRKKRKKRYHRHSAEQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENEKLRAENMAIREAMRDPICSNCGGPAIIGEISIEEQQLRIENARLKDELDRVCALAGKFLGRAAVPVSPPLASSSCLEEYGGGGTMMMERCVYLEMGLAAMDEVVKMANEEEPLWVREKLNEEEYLRMFSGIKHINNGFVSEASRQTALVFLNTSALLDTLMDPDRWVDMFPNLVATASIADIISGGLGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWAIVDVSIDPVTDTSSSPSCRRLPSGCLIHDMTNGYSKVTWVEHSEYDESYIHELYRPLIRSGLGFGAQRWIAALQRQSECLAILSTPLDHSGISANGRRNMVKLAQRMTANFCAGVCASTVYKWNKLNTRNNNVGEDVKVMTRKSVEDPGEPPGTVLSAATSVWVAAAVERVFEFLRDERLRSEWDILSNGGPMQEMLRIPKSQHRHHPNAVSLLRATSLNPNQSSMLILQETCTDASGSLVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAVVPAEEDGGGGRGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIRNALRCHEPST 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6914657 6920593 - XM_039049341.1 Bhi01g00409 23182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00409 679 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
Bhi01g00409 679 MobiDBLite consensus disorder prediction 1 20 - -
Bhi01g00409 679 Gene3D - 21 102 - -
Bhi01g00409 679 SUPERFAMILY Bet v1-like 206 425 - -
Bhi01g00409 679 CDD homeodomain 50 103 IPR001356 GO:0003677
Bhi01g00409 679 ProSiteProfiles START domain profile. 202 428 IPR002913 GO:0008289
Bhi01g00409 679 SUPERFAMILY Homeodomain-like 33 103 IPR009057 -
Bhi01g00409 679 SMART START_1 211 425 IPR002913 GO:0008289
Bhi01g00409 679 SMART HOX_1 44 107 IPR001356 GO:0003677
Bhi01g00409 679 Coils Coil 144 164 - -
Bhi01g00409 679 Pfam Homeodomain 46 101 IPR001356 GO:0003677
Bhi01g00409 679 MobiDBLite consensus disorder prediction 1 53 - -
Bhi01g00409 679 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 8 195 - -
Bhi01g00409 679 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 203 673 - -
Bhi01g00409 679 SUPERFAMILY Bet v1-like 443 662 - -
Bhi01g00409 679 Coils Coil 97 132 - -
Bhi01g00409 679 CDD START_ArGLABRA2_like 210 424 - -
Bhi01g00409 679 Pfam START domain 214 424 IPR002913 GO:0008289
Bhi01g00409 679 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Bhi01g00409 679 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 203 673 IPR042160 -
Bhi01g00409 679 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 8 195 IPR042160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00409 Bhi-Chr1:6914657 Bhi01g00412 Bhi-Chr1:6914657 0 dispersed
Bhi01g00408 Bhi-Chr1:6914657 Bhi01g00409 Bhi-Chr1:6914657 0 tandem
Bhi01g00409 Bhi-Chr1:6914657 Bhi01g00410 Bhi-Chr1:6914657 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38 PF01852 START 3.10E-47 CL0209 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00409 K09338 - gmx:100783614 889.412